Results 21 - 40 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 24159 | 0.73 | 0.384337 |
Target: 5'- gUCACGCCGuUGuAgGUGACcgUGCCGUCGg -3' miRNA: 3'- -GGUGCGGCuAC-UgCAUUG--ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 45852 | 0.73 | 0.393077 |
Target: 5'- gCCGCGCUcguuGAUGGCGUcggcgaucAugUGCgCGCCGu -3' miRNA: 3'- -GGUGCGG----CUACUGCA--------UugACG-GCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 22523 | 0.73 | 0.393077 |
Target: 5'- gCCGCGCCGAcggcgaUGGCGUugaggcccagcgGGCUGguuaggaauCCGCCGa -3' miRNA: 3'- -GGUGCGGCU------ACUGCA------------UUGAC---------GGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 18459 | 0.73 | 0.401945 |
Target: 5'- aCuuGCCGGUGAUGUcgAGCggcaccgcGCCGCCGg -3' miRNA: 3'- gGugCGGCUACUGCA--UUGa-------CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 52566 | 0.73 | 0.401945 |
Target: 5'- aCGCGCUGGagGugGUGGCggccaUGCCGUCGg -3' miRNA: 3'- gGUGCGGCUa-CugCAUUG-----ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 49841 | 0.73 | 0.410939 |
Target: 5'- cCCGCGCUGGUGcgcucCGUGccgaGCgUGCCGCUGa -3' miRNA: 3'- -GGUGCGGCUACu----GCAU----UG-ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 62921 | 0.73 | 0.411845 |
Target: 5'- cCCugGCCGGUGACGaAGCcgaccagcgcgcggcGCgCGCCGa -3' miRNA: 3'- -GGugCGGCUACUGCaUUGa--------------CG-GCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 48525 | 0.72 | 0.420057 |
Target: 5'- cCCuCGCgGAUGAUGUAGUUGCCGaCCu -3' miRNA: 3'- -GGuGCGgCUACUGCAUUGACGGC-GGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 11301 | 0.72 | 0.429296 |
Target: 5'- aCCACGCUGGUGGCc--ACcGCUGCCu -3' miRNA: 3'- -GGUGCGGCUACUGcauUGaCGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 31224 | 0.72 | 0.429296 |
Target: 5'- gCCgACGCCGGUGACGccAUUGCCGauGu -3' miRNA: 3'- -GG-UGCGGCUACUGCauUGACGGCggC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 30995 | 0.72 | 0.429296 |
Target: 5'- -gACGCUGAUGGCGcAGCUGggccugaCGCCGa -3' miRNA: 3'- ggUGCGGCUACUGCaUUGACg------GCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 16879 | 0.72 | 0.429296 |
Target: 5'- uCUGCGCCGGUGugGUGcagaguuucaaGCgcacaCCGCCGa -3' miRNA: 3'- -GGUGCGGCUACugCAU-----------UGac---GGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 42790 | 0.72 | 0.429296 |
Target: 5'- gUCACGCCGGUGACcagaucguugAACUGguuggccaCCGCCGu -3' miRNA: 3'- -GGUGCGGCUACUGca--------UUGAC--------GGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 58505 | 0.72 | 0.438654 |
Target: 5'- gCCGCGCCGAcuGCGguccAGCgUGCCGuuGg -3' miRNA: 3'- -GGUGCGGCUacUGCa---UUG-ACGGCggC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 61066 | 0.72 | 0.438654 |
Target: 5'- aCGgGCCGGUGGCGgcAUUgucuccgcaacGCCGCCa -3' miRNA: 3'- gGUgCGGCUACUGCauUGA-----------CGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 13272 | 0.72 | 0.447174 |
Target: 5'- gCGCGCUGGUGGCcgccgGUGGCUggugcgcGCCGUCGg -3' miRNA: 3'- gGUGCGGCUACUG-----CAUUGA-------CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 924 | 0.72 | 0.447174 |
Target: 5'- gCACGCCGuugaucuGUGugGUGuccauGCggGCCGCCa -3' miRNA: 3'- gGUGCGGC-------UACugCAU-----UGa-CGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 4990 | 0.72 | 0.448127 |
Target: 5'- gCCGCcgagGCCGGUGGCGaccagGCCGCCu -3' miRNA: 3'- -GGUG----CGGCUACUGCauugaCGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 27744 | 0.72 | 0.448127 |
Target: 5'- cUCGCGCCgucGAUGACGcAGgUGUCGCCc -3' miRNA: 3'- -GGUGCGG---CUACUGCaUUgACGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 61517 | 0.72 | 0.448127 |
Target: 5'- gCGCGCCagcaGUGACGUGcaggcgcugGCgUGCCGCUGg -3' miRNA: 3'- gGUGCGGc---UACUGCAU---------UG-ACGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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