miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 8725 0.66 0.806628
Target:  5'- gCgGCGCUGAUcccGAUGUuc--GCCGCCGc -3'
miRNA:   3'- -GgUGCGGCUA---CUGCAuugaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 9293 0.67 0.748499
Target:  5'- cCCgACGCCGAcggUGGCGcuACcccCCGCCGa -3'
miRNA:   3'- -GG-UGCGGCU---ACUGCauUGac-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 9851 0.81 0.122992
Target:  5'- aCCGcCGCCGGUGA----GCUGCCGCCGg -3'
miRNA:   3'- -GGU-GCGGCUACUgcauUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 9914 0.66 0.797313
Target:  5'- uCCGgGCUGAccgaGGCgGUGAUUGUgGCCGg -3'
miRNA:   3'- -GGUgCGGCUa---CUG-CAUUGACGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 10310 0.66 0.768432
Target:  5'- cCCGCaCCGAUGugcGCGccgcAACgcagGCCGCCa -3'
miRNA:   3'- -GGUGcGGCUAC---UGCa---UUGa---CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 10600 0.67 0.717791
Target:  5'- gCGCGCgaGGUG-CGcAACUGCCGuuGc -3'
miRNA:   3'- gGUGCGg-CUACuGCaUUGACGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 10638 0.68 0.642752
Target:  5'- gCugGCCGAgGACGaggAGCUGCCcagugagGUCGa -3'
miRNA:   3'- gGugCGGCUaCUGCa--UUGACGG-------CGGC- -5'
18991 3' -55.6 NC_004684.1 + 10973 0.68 0.66515
Target:  5'- aCCGCGUCGGUGaACGU-GCggaagGUcuCGCCGg -3'
miRNA:   3'- -GGUGCGGCUAC-UGCAuUGa----CG--GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 11117 1.11 0.001119
Target:  5'- aCCACGCCGAUGACGUAACUGCCGCCGu -3'
miRNA:   3'- -GGUGCGGCUACUGCAUUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 11151 0.68 0.66515
Target:  5'- gUCGCGCCGucgGugGaccugGCCGCCa -3'
miRNA:   3'- -GGUGCGGCua-CugCauugaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 11301 0.72 0.429296
Target:  5'- aCCACGCUGGUGGCc--ACcGCUGCCu -3'
miRNA:   3'- -GGUGCGGCUACUGcauUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 11593 0.67 0.717791
Target:  5'- gCC-CGCCGGUgcgccuggacGACGgcaccgAGCUgGCCGUCGg -3'
miRNA:   3'- -GGuGCGGCUA----------CUGCa-----UUGA-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 11656 0.66 0.797313
Target:  5'- gCCACGCCagcacGGCGgccAACgUGaCCGCCGc -3'
miRNA:   3'- -GGUGCGGcua--CUGCa--UUG-AC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 11757 0.66 0.758526
Target:  5'- gCGCGgCGGUcACGUug--GCCGCCGu -3'
miRNA:   3'- gGUGCgGCUAcUGCAuugaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 12205 0.67 0.717791
Target:  5'- uCCucaGCCGggGucggggguuGCGUGAUgGCCGCCGc -3'
miRNA:   3'- -GGug-CGGCuaC---------UGCAUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 12817 0.74 0.334668
Target:  5'- aCGCGcCCGAgGACGgcggcuCUGCUGCCGa -3'
miRNA:   3'- gGUGC-GGCUaCUGCauu---GACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 12909 0.66 0.778205
Target:  5'- gCCAgcggUGCCGGUGcgcCGUcggccAACUucGCCGCCGu -3'
miRNA:   3'- -GGU----GCGGCUACu--GCA-----UUGA--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 13067 0.68 0.686364
Target:  5'- cCgGCGCuCGGUGuuGc--CUGCCGCCGc -3'
miRNA:   3'- -GgUGCG-GCUACugCauuGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 13272 0.72 0.447174
Target:  5'- gCGCGCUGGUGGCcgccgGUGGCUggugcgcGCCGUCGg -3'
miRNA:   3'- gGUGCGGCUACUG-----CAUUGA-------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 14497 0.7 0.531735
Target:  5'- aCCACGCCGGucgccgguggcacggUGACGgugacccuggccUAACUGgCCGaCCGc -3'
miRNA:   3'- -GGUGCGGCU---------------ACUGC------------AUUGAC-GGC-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.