Results 1 - 20 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 11117 | 1.11 | 0.001119 |
Target: 5'- aCCACGCCGAUGACGUAACUGCCGCCGu -3' miRNA: 3'- -GGUGCGGCUACUGCAUUGACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 924 | 0.72 | 0.447174 |
Target: 5'- gCACGCCGuugaucuGUGugGUGuccauGCggGCCGCCa -3' miRNA: 3'- gGUGCGGC-------UACugCAU-----UGa-CGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 57767 | 0.71 | 0.467406 |
Target: 5'- gCCugGCCGAUGGCcac-CUGCUGUgGg -3' miRNA: 3'- -GGugCGGCUACUGcauuGACGGCGgC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 17612 | 0.66 | 0.806628 |
Target: 5'- aCCACGUCGuccGGCGUGGCa-CCGCg- -3' miRNA: 3'- -GGUGCGGCua-CUGCAUUGacGGCGgc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 26490 | 0.79 | 0.165273 |
Target: 5'- gCGCGCCGGUGGCGgcguUGGCcagaucGCCGCCGa -3' miRNA: 3'- gGUGCGGCUACUGC----AUUGa-----CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 66602 | 0.77 | 0.220161 |
Target: 5'- gCCGCGCUGAaGGCGgcccGCgagGCCGCCGc -3' miRNA: 3'- -GGUGCGGCUaCUGCau--UGa--CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 4224 | 0.77 | 0.237621 |
Target: 5'- uCCGCGCCGAUG-CGcuccugGACcuggaGCCGCCGg -3' miRNA: 3'- -GGUGCGGCUACuGCa-----UUGa----CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 25951 | 0.75 | 0.319188 |
Target: 5'- gCCugGCCGAgGcCGUugAACagGCCGCCGa -3' miRNA: 3'- -GGugCGGCUaCuGCA--UUGa-CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 24159 | 0.73 | 0.384337 |
Target: 5'- gUCACGCCGuUGuAgGUGACcgUGCCGUCGg -3' miRNA: 3'- -GGUGCGGCuAC-UgCAUUG--ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 42790 | 0.72 | 0.429296 |
Target: 5'- gUCACGCCGGUGACcagaucguugAACUGguuggccaCCGCCGu -3' miRNA: 3'- -GGUGCGGCUACUGca--------UUGAC--------GGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 52566 | 0.73 | 0.401945 |
Target: 5'- aCGCGCUGGagGugGUGGCggccaUGCCGUCGg -3' miRNA: 3'- gGUGCGGCUa-CugCAUUG-----ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 24934 | 0.73 | 0.367248 |
Target: 5'- aCgGC-CCGGUGGCGcUAccGCUGCCGCCc -3' miRNA: 3'- -GgUGcGGCUACUGC-AU--UGACGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 15783 | 0.83 | 0.093489 |
Target: 5'- aCgAUGCCGGUGGCGUcGgUGCCGCCGc -3' miRNA: 3'- -GgUGCGGCUACUGCAuUgACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 18459 | 0.73 | 0.401945 |
Target: 5'- aCuuGCCGGUGAUGUcgAGCggcaccgcGCCGCCGg -3' miRNA: 3'- gGugCGGCUACUGCA--UUGa-------CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 26715 | 0.82 | 0.101555 |
Target: 5'- uCCGCGCCGAcggugucguUGGCGaUGACgccGCCGCCGg -3' miRNA: 3'- -GGUGCGGCU---------ACUGC-AUUGa--CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 45306 | 0.74 | 0.334668 |
Target: 5'- aCCaaGCGCCGcaugGACGc-GCUGCCGCUGg -3' miRNA: 3'- -GG--UGCGGCua--CUGCauUGACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 49841 | 0.73 | 0.410939 |
Target: 5'- cCCGCGCUGGUGcgcucCGUGccgaGCgUGCCGCUGa -3' miRNA: 3'- -GGUGCGGCUACu----GCAU----UG-ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 4990 | 0.72 | 0.448127 |
Target: 5'- gCCGCcgagGCCGGUGGCGaccagGCCGCCu -3' miRNA: 3'- -GGUG----CGGCUACUGCauugaCGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 50697 | 0.79 | 0.160945 |
Target: 5'- gCCACGCCGAUGACcc-GCcGaCCGCCGa -3' miRNA: 3'- -GGUGCGGCUACUGcauUGaC-GGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 66751 | 0.77 | 0.225856 |
Target: 5'- gCAcCGCCGGUGACcgGGCcGCCGCCGa -3' miRNA: 3'- gGU-GCGGCUACUGcaUUGaCGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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