miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18993 5' -57 NC_004684.1 + 17747 0.66 0.669074
Target:  5'- gGCCAUg---CUGGCUuGUCuCCUGCUa -3'
miRNA:   3'- -CGGUAacuaGACCGAcCAGcGGGCGA- -5'
18993 5' -57 NC_004684.1 + 31088 0.66 0.669074
Target:  5'- uGCCGccGAgggCUGGCaGGaCGCCgCGCa -3'
miRNA:   3'- -CGGUaaCUa--GACCGaCCaGCGG-GCGa -5'
18993 5' -57 NC_004684.1 + 49555 0.66 0.669074
Target:  5'- gGCCGacUUcGggCUGGCgUGGccuUCGCCUGCg -3'
miRNA:   3'- -CGGU--AA-CuaGACCG-ACC---AGCGGGCGa -5'
18993 5' -57 NC_004684.1 + 62226 0.66 0.664774
Target:  5'- cGCCAccucgacaucggGGUagcgcGGCUGGUCcuGCCCGCUc -3'
miRNA:   3'- -CGGUaa----------CUAga---CCGACCAG--CGGGCGA- -5'
18993 5' -57 NC_004684.1 + 1229 0.66 0.647532
Target:  5'- gGCCucggcGGcCUGGUcGGUCGCCCGg- -3'
miRNA:   3'- -CGGuaa--CUaGACCGaCCAGCGGGCga -5'
18993 5' -57 NC_004684.1 + 57558 0.66 0.647532
Target:  5'- cGCCGagcUGcgCcGGUUGGccgacaUCGCCCGCa -3'
miRNA:   3'- -CGGUa--ACuaGaCCGACC------AGCGGGCGa -5'
18993 5' -57 NC_004684.1 + 58623 0.66 0.647532
Target:  5'- gGCCcgUGG-C-GGCUGGU-GCCgCGCUg -3'
miRNA:   3'- -CGGuaACUaGaCCGACCAgCGG-GCGA- -5'
18993 5' -57 NC_004684.1 + 921 0.67 0.625936
Target:  5'- cGCCGUUGAUCUGugugguguccauGCgGGcCGCCacgGCg -3'
miRNA:   3'- -CGGUAACUAGAC------------CGaCCaGCGGg--CGa -5'
18993 5' -57 NC_004684.1 + 63465 0.67 0.615142
Target:  5'- cGCCAUcGG-CUGGC-GcGUCGgCCGCUc -3'
miRNA:   3'- -CGGUAaCUaGACCGaC-CAGCgGGCGA- -5'
18993 5' -57 NC_004684.1 + 66084 0.67 0.615142
Target:  5'- cGCCGUUGcaCUGGCcagcgaccUGGagGCCUGCc -3'
miRNA:   3'- -CGGUAACuaGACCG--------ACCagCGGGCGa -5'
18993 5' -57 NC_004684.1 + 454 0.67 0.615142
Target:  5'- gGCCA--GGUCgcgcaUGGCcaucagggugUGGUUGCCCGCc -3'
miRNA:   3'- -CGGUaaCUAG-----ACCG----------ACCAGCGGGCGa -5'
18993 5' -57 NC_004684.1 + 1261 0.67 0.615142
Target:  5'- gGCCcagaUGcgCUGGCUGGUgGCCaUGUUc -3'
miRNA:   3'- -CGGua--ACuaGACCGACCAgCGG-GCGA- -5'
18993 5' -57 NC_004684.1 + 13916 0.67 0.604361
Target:  5'- gGCCAgaucGAcagCUGGCUGG-CGgCUCGCa -3'
miRNA:   3'- -CGGUaa--CUa--GACCGACCaGC-GGGCGa -5'
18993 5' -57 NC_004684.1 + 11934 0.67 0.582878
Target:  5'- gGCCGUccg-CUGGCcaUGGUCGCCaGCc -3'
miRNA:   3'- -CGGUAacuaGACCG--ACCAGCGGgCGa -5'
18993 5' -57 NC_004684.1 + 31418 0.69 0.478956
Target:  5'- aCCA-UGAUuuccucaacgucCUGGCUGGUCuGCCCGg- -3'
miRNA:   3'- cGGUaACUA------------GACCGACCAG-CGGGCga -5'
18993 5' -57 NC_004684.1 + 5970 0.7 0.430454
Target:  5'- cGCCAcccGGUCaGGCUGGUgcUGCCCGg- -3'
miRNA:   3'- -CGGUaa-CUAGaCCGACCA--GCGGGCga -5'
18993 5' -57 NC_004684.1 + 42591 0.7 0.430454
Target:  5'- cGCCGUUGAUCgcguUGGcCUGGUCGUUgGaCa -3'
miRNA:   3'- -CGGUAACUAG----ACC-GACCAGCGGgC-Ga -5'
18993 5' -57 NC_004684.1 + 37631 0.71 0.393799
Target:  5'- cGCCGUcggUGcgCUGGCcaUGGcCGCCCGg- -3'
miRNA:   3'- -CGGUA---ACuaGACCG--ACCaGCGGGCga -5'
18993 5' -57 NC_004684.1 + 7362 0.71 0.390247
Target:  5'- cGCCGUgGAgaacgcauccgagCUGuGCUGGUggaugCGCCCGCUg -3'
miRNA:   3'- -CGGUAaCUa------------GAC-CGACCA-----GCGGGCGA- -5'
18993 5' -57 NC_004684.1 + 44080 0.71 0.36767
Target:  5'- gGCCAacgcagCUGGCcgGGUaCGCCCGCg -3'
miRNA:   3'- -CGGUaacua-GACCGa-CCA-GCGGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.