miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 28293 0.66 0.46924
Target:  5'- -aGCGCaGGCuGGCGGugcuguccACGUGCGCcucgcgcAGGu -3'
miRNA:   3'- caCGCG-CCG-CCGCU--------UGCACGCG-------UCCu -5'
18995 5' -61.1 NC_004684.1 + 28579 0.67 0.423574
Target:  5'- gGUGUGCGGCGGCu-GCcUGCcgguCGGGGa -3'
miRNA:   3'- -CACGCGCCGCCGcuUGcACGc---GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 28728 0.69 0.30906
Target:  5'- -gGCGCGucuGCGGCaccGACGUGCGguGcGAg -3'
miRNA:   3'- caCGCGC---CGCCGc--UUGCACGCguC-CU- -5'
18995 5' -61.1 NC_004684.1 + 29761 0.72 0.198584
Target:  5'- -cGCGCGGUcuGGuCGGcCGcGCGCAGGAg -3'
miRNA:   3'- caCGCGCCG--CC-GCUuGCaCGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 31485 0.68 0.347082
Target:  5'- -cGCGuUGGCcugguuGGCGAGCGUGaUGguGGAc -3'
miRNA:   3'- caCGC-GCCG------CCGCUUGCAC-GCguCCU- -5'
18995 5' -61.1 NC_004684.1 + 31732 0.67 0.414585
Target:  5'- -aGCGUcccGGCGGgGAugGUGUaGCGcGGAc -3'
miRNA:   3'- caCGCG---CCGCCgCUugCACG-CGU-CCU- -5'
18995 5' -61.1 NC_004684.1 + 33060 0.68 0.371452
Target:  5'- uUGCGUcgaGGCGGCGAgguuggccagcGCGaGCGCcuGGAg -3'
miRNA:   3'- cACGCG---CCGCCGCU-----------UGCaCGCGu-CCU- -5'
18995 5' -61.1 NC_004684.1 + 33489 0.69 0.287813
Target:  5'- gGUGgaCGCGGCGGCGGcccuguacucGCGgGCGguGGc -3'
miRNA:   3'- -CAC--GCGCCGCCGCU----------UGCaCGCguCCu -5'
18995 5' -61.1 NC_004684.1 + 33833 0.66 0.441897
Target:  5'- uGUGCccgGCGGCGGCGGcaACG-GgGCcaaccaAGGAu -3'
miRNA:   3'- -CACG---CGCCGCCGCU--UGCaCgCG------UCCU- -5'
18995 5' -61.1 NC_004684.1 + 34085 0.73 0.161176
Target:  5'- -gGCGCGGCGggcGCGAACaacgcgaGUGCGCAGa- -3'
miRNA:   3'- caCGCGCCGC---CGCUUG-------CACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 35424 0.67 0.388335
Target:  5'- -aGCGCGGgaGGCGAugGUccCGCcGGAc -3'
miRNA:   3'- caCGCGCCg-CCGCUugCAc-GCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 36313 0.66 0.451225
Target:  5'- -aGCGgucuCGGCGGUGGccACGcUGCGCAGc- -3'
miRNA:   3'- caCGC----GCCGCCGCU--UGC-ACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 36844 0.7 0.267733
Target:  5'- -gGCGCGGCccuGGCG-GCGUcaGCGcCGGGAc -3'
miRNA:   3'- caCGCGCCG---CCGCuUGCA--CGC-GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 37234 0.67 0.414585
Target:  5'- -cGCGCucccagaacuGGCGGCGca-GUGCGCuGGc -3'
miRNA:   3'- caCGCG----------CCGCCGCuugCACGCGuCCu -5'
18995 5' -61.1 NC_004684.1 + 38961 0.68 0.355077
Target:  5'- -aGCGUGGCGGCGuugaaccgcGCGUaaucgguguugaGCGcCAGGGc -3'
miRNA:   3'- caCGCGCCGCCGCu--------UGCA------------CGC-GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 39037 0.66 0.441897
Target:  5'- -gGCuCGGCGGUGuccauUGUGCGCcGGGu -3'
miRNA:   3'- caCGcGCCGCCGCuu---GCACGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 40707 0.78 0.072237
Target:  5'- -cGCGCGGCGGUGAucaACGUGgUGCuGGAc -3'
miRNA:   3'- caCGCGCCGCCGCU---UGCAC-GCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 40733 0.75 0.120881
Target:  5'- -aGCGCGGCGG-GGGCGgugGCGguGGu -3'
miRNA:   3'- caCGCGCCGCCgCUUGCa--CGCguCCu -5'
18995 5' -61.1 NC_004684.1 + 41411 0.66 0.470199
Target:  5'- -cGuCGCGGUGGCGuccccCGUGgCGguGGu -3'
miRNA:   3'- caC-GCGCCGCCGCuu---GCAC-GCguCCu -5'
18995 5' -61.1 NC_004684.1 + 41568 0.66 0.449351
Target:  5'- gGUGCGacaccuugcuuCGGCGGCGGcauuuccugGCGCAGGu -3'
miRNA:   3'- -CACGC-----------GCCGCCGCUugca-----CGCGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.