miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 19446 0.7 0.267733
Target:  5'- cGUGCGCccaugcccgGGCGGCGGugGcccgcgcgacaUGCGCcccuGGAg -3'
miRNA:   3'- -CACGCG---------CCGCCGCUugC-----------ACGCGu---CCU- -5'
18995 5' -61.1 NC_004684.1 + 20120 0.68 0.347082
Target:  5'- cUGgGCGGCGGCaccaaGAACGUGCGg---- -3'
miRNA:   3'- cACgCGCCGCCG-----CUUGCACGCguccu -5'
18995 5' -61.1 NC_004684.1 + 20448 0.69 0.287813
Target:  5'- uGUGCaCGGCGGCGAagAUGcUGCGCAc-- -3'
miRNA:   3'- -CACGcGCCGCCGCU--UGC-ACGCGUccu -5'
18995 5' -61.1 NC_004684.1 + 20890 0.67 0.396964
Target:  5'- -cGuCGCGGCuGGCGuuGCGUGcCGguGGc -3'
miRNA:   3'- caC-GCGCCG-CCGCu-UGCAC-GCguCCu -5'
18995 5' -61.1 NC_004684.1 + 21240 0.69 0.287813
Target:  5'- -gGCGUGGCcGCGAGguguuCGUGCGcCAGGu -3'
miRNA:   3'- caCGCGCCGcCGCUU-----GCACGC-GUCCu -5'
18995 5' -61.1 NC_004684.1 + 21249 0.68 0.347082
Target:  5'- cGUGgacaGCuGCGGCGuauuucGCGUGCGCGGuGAc -3'
miRNA:   3'- -CACg---CGcCGCCGCu-----UGCACGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 21376 0.66 0.470199
Target:  5'- uUGCGCagauacGGCcgGGCGcGCGUGC-CGGGGu -3'
miRNA:   3'- cACGCG------CCG--CCGCuUGCACGcGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 22187 0.7 0.280991
Target:  5'- ---gGCGGCGGCGAccgccuuCGgacugGCGCAGGu -3'
miRNA:   3'- cacgCGCCGCCGCUu------GCa----CGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 22359 0.75 0.117694
Target:  5'- -gGCgGCGGCGGCGGucGCGcugGCGguGGAc -3'
miRNA:   3'- caCG-CGCCGCCGCU--UGCa--CGCguCCU- -5'
18995 5' -61.1 NC_004684.1 + 22449 0.71 0.225291
Target:  5'- -gGCGCGGCGGCGAucccGCccGCGCuccAGGc -3'
miRNA:   3'- caCGCGCCGCCGCU----UGcaCGCG---UCCu -5'
18995 5' -61.1 NC_004684.1 + 23333 0.66 0.432679
Target:  5'- uUGCGUGGUGGCGucGCGgaGCcauuuCAGGAa -3'
miRNA:   3'- cACGCGCCGCCGCu-UGCa-CGc----GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 23714 0.65 0.486641
Target:  5'- cUGgGCGGCGGCGcgcucaacaucgcuGGCG-GCGCAc-- -3'
miRNA:   3'- cACgCGCCGCCGC--------------UUGCaCGCGUccu -5'
18995 5' -61.1 NC_004684.1 + 24261 0.66 0.429936
Target:  5'- uUGgGCGGCGGCaccgccugcGGACccugcaccggagcgGUGCGCAGcGGg -3'
miRNA:   3'- cACgCGCCGCCG---------CUUG--------------CACGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 25471 0.74 0.145528
Target:  5'- uGUGCGCGGCGGCGua-G-GCGCugaccGGGu -3'
miRNA:   3'- -CACGCGCCGCCGCuugCaCGCGu----CCU- -5'
18995 5' -61.1 NC_004684.1 + 25563 0.66 0.479837
Target:  5'- -gGCGCGGUGGa--AgGUGCGCuacccGGAg -3'
miRNA:   3'- caCGCGCCGCCgcuUgCACGCGu----CCU- -5'
18995 5' -61.1 NC_004684.1 + 25643 0.67 0.414585
Target:  5'- uGUGCcguucgagaGCGGCGGCGGuaccGgGCAGGGc -3'
miRNA:   3'- -CACG---------CGCCGCCGCUugcaCgCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 26583 0.75 0.127497
Target:  5'- -cGCGCGGCGGU----GUGCGCGGGu -3'
miRNA:   3'- caCGCGCCGCCGcuugCACGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 27169 0.66 0.479837
Target:  5'- cUGgGCGGCGauguccacgccuGCGGACccgGCGCuGGAg -3'
miRNA:   3'- cACgCGCCGC------------CGCUUGca-CGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 27983 0.69 0.316403
Target:  5'- aGUGCGgaguuCGGCGGCGucuGgGUGaUGCAGGu -3'
miRNA:   3'- -CACGC-----GCCGCCGCu--UgCAC-GCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 28273 0.66 0.440971
Target:  5'- gGUGCGCgaGGCcGCuGGCGUGgugcucaCGCAGGAg -3'
miRNA:   3'- -CACGCG--CCGcCGcUUGCAC-------GCGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.