miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 2265 0.69 0.287813
Target:  5'- -aGCGCGGCGGCGGGCauUGcCGCcagccuGGGc -3'
miRNA:   3'- caCGCGCCGCCGCUUGc-AC-GCGu-----CCU- -5'
18995 5' -61.1 NC_004684.1 + 3787 0.71 0.235044
Target:  5'- -aGCGCGGCGGCGcuGgcgaucuccugccaGCGUGCcaaCAGGGu -3'
miRNA:   3'- caCGCGCCGCCGC--U--------------UGCACGc--GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 5791 0.66 0.459712
Target:  5'- cUGCGCcaGGCGuGCGAggucgggACGUGcCGCAccguGGAg -3'
miRNA:   3'- cACGCG--CCGC-CGCU-------UGCAC-GCGU----CCU- -5'
18995 5' -61.1 NC_004684.1 + 6161 0.68 0.355077
Target:  5'- ---gGCGGCGGCcAGCGUGCgGCGGu- -3'
miRNA:   3'- cacgCGCCGCCGcUUGCACG-CGUCcu -5'
18995 5' -61.1 NC_004684.1 + 6360 0.67 0.423574
Target:  5'- aUGU-CGGCGGCGAugGccugcgcguUGCGCAGc- -3'
miRNA:   3'- cACGcGCCGCCGCUugC---------ACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 6420 0.67 0.378987
Target:  5'- -aGCuCGGCGGCGGcgugaacgccuucGCGcuuggccgagGCGCAGGGg -3'
miRNA:   3'- caCGcGCCGCCGCU-------------UGCa---------CGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 7592 0.67 0.388335
Target:  5'- -cGCGCGGCGGCcAGC--GCGUAGa- -3'
miRNA:   3'- caCGCGCCGCCGcUUGcaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 8822 0.72 0.179246
Target:  5'- -gGCGCGGCGGCGAACaucgggaucaGCGCcgccauGGAg -3'
miRNA:   3'- caCGCGCCGCCGCUUGca--------CGCGu-----CCU- -5'
18995 5' -61.1 NC_004684.1 + 9660 0.67 0.423574
Target:  5'- -cGgGCGGCGGUGAA-GcGCGCGGu- -3'
miRNA:   3'- caCgCGCCGCCGCUUgCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 10233 0.71 0.225291
Target:  5'- gGUGCGCGaGCaGCuGGcCGUGCGCGuGGAg -3'
miRNA:   3'- -CACGCGC-CGcCG-CUuGCACGCGU-CCU- -5'
18995 5' -61.1 NC_004684.1 + 10248 0.66 0.441897
Target:  5'- -aGCGCGGUGGCcAGCG-GCgGCuGGc -3'
miRNA:   3'- caCGCGCCGCCGcUUGCaCG-CGuCCu -5'
18995 5' -61.1 NC_004684.1 + 10982 0.66 0.470199
Target:  5'- -aGCGCGaucaccgcGuCGGUGAACGUGCGgaAGGu -3'
miRNA:   3'- caCGCGC--------C-GCCGCUUGCACGCg-UCCu -5'
18995 5' -61.1 NC_004684.1 + 11879 0.73 0.154985
Target:  5'- -gGCGCuGGCGGUGAacacaccgggauucaACGUGCGCGGc- -3'
miRNA:   3'- caCGCG-CCGCCGCU---------------UGCACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 12018 0.69 0.323877
Target:  5'- --uCGCGGCGGCGGugGccaagGCcaugcucgaccaGCAGGAg -3'
miRNA:   3'- cacGCGCCGCCGCUugCa----CG------------CGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 13022 0.66 0.470199
Target:  5'- gGUGcCGaCGGCGGCGAaguuggccgACG-GCGCAccGGc -3'
miRNA:   3'- -CAC-GC-GCCGCCGCU---------UGCaCGCGU--CCu -5'
18995 5' -61.1 NC_004684.1 + 13721 1.08 0.00042
Target:  5'- gGUGCGCGGCGGCGAACGUGCGCAGGAa -3'
miRNA:   3'- -CACGCGCCGCCGCUUGCACGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 15250 0.73 0.169776
Target:  5'- gGUGCGUGGCGGCG-GCGgccagcUGCGCGcuggcguGGAu -3'
miRNA:   3'- -CACGCGCCGCCGCuUGC------ACGCGU-------CCU- -5'
18995 5' -61.1 NC_004684.1 + 16749 0.66 0.479837
Target:  5'- -aGCGCGGCuGGCcugGAACu--CGCGGGGa -3'
miRNA:   3'- caCGCGCCG-CCG---CUUGcacGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 16790 0.67 0.396964
Target:  5'- -gGUGCGGC-GCGu-CGUGUGguGGGc -3'
miRNA:   3'- caCGCGCCGcCGCuuGCACGCguCCU- -5'
18995 5' -61.1 NC_004684.1 + 18428 0.7 0.267733
Target:  5'- -gGCGCaccGGCGGCcGACGUGgcucccgaGCAGGAc -3'
miRNA:   3'- caCGCG---CCGCCGcUUGCACg-------CGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.