miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 13721 1.08 0.00042
Target:  5'- gGUGCGCGGCGGCGAACGUGCGCAGGAa -3'
miRNA:   3'- -CACGCGCCGCCGCUUGCACGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 40707 0.78 0.072237
Target:  5'- -cGCGCGGCGGUGAucaACGUGgUGCuGGAc -3'
miRNA:   3'- caCGCGCCGCCGCU---UGCAC-GCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 22359 0.75 0.117694
Target:  5'- -gGCgGCGGCGGCGGucGCGcugGCGguGGAc -3'
miRNA:   3'- caCG-CGCCGCCGCU--UGCa--CGCguCCU- -5'
18995 5' -61.1 NC_004684.1 + 40733 0.75 0.120881
Target:  5'- -aGCGCGGCGG-GGGCGgugGCGguGGu -3'
miRNA:   3'- caCGCGCCGCCgCUUGCa--CGCguCCu -5'
18995 5' -61.1 NC_004684.1 + 62983 0.75 0.124148
Target:  5'- gGUGCGCacguggccGGUGGCcggGAACGcgaUGCGCAGGAu -3'
miRNA:   3'- -CACGCG--------CCGCCG---CUUGC---ACGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 26583 0.75 0.127497
Target:  5'- -cGCGCGGCGGU----GUGCGCGGGu -3'
miRNA:   3'- caCGCGCCGCCGcuugCACGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 42227 0.74 0.143247
Target:  5'- cGUGCGUGGUGGCGucgGCGUugaacaccaugucgcGCGCGGuGAa -3'
miRNA:   3'- -CACGCGCCGCCGCu--UGCA---------------CGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 25471 0.74 0.145528
Target:  5'- uGUGCGCGGCGGCGua-G-GCGCugaccGGGu -3'
miRNA:   3'- -CACGCGCCGCCGCuugCaCGCGu----CCU- -5'
18995 5' -61.1 NC_004684.1 + 59625 0.73 0.153371
Target:  5'- -cGCGCuGGCGGUgcaGGACcuGUGCGCAGGc -3'
miRNA:   3'- caCGCG-CCGCCG---CUUG--CACGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 63865 0.73 0.154985
Target:  5'- cGUGCGCGGUGGCGGccuucaucgggcccaGCGgUGC-CAGGu -3'
miRNA:   3'- -CACGCGCCGCCGCU---------------UGC-ACGcGUCCu -5'
18995 5' -61.1 NC_004684.1 + 11879 0.73 0.154985
Target:  5'- -gGCGCuGGCGGUGAacacaccgggauucaACGUGCGCGGc- -3'
miRNA:   3'- caCGCG-CCGCCGCU---------------UGCACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 55411 0.73 0.161176
Target:  5'- cUGCGCuGGCGGUGGagaccacccagcaGCGUGCGCcGGu -3'
miRNA:   3'- cACGCG-CCGCCGCU-------------UGCACGCGuCCu -5'
18995 5' -61.1 NC_004684.1 + 34085 0.73 0.161176
Target:  5'- -gGCGCGGCGggcGCGAACaacgcgaGUGCGCAGa- -3'
miRNA:   3'- caCGCGCCGC---CGCUUG-------CACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 62439 0.73 0.165856
Target:  5'- gGUGCGCaGGCuGGCGcGCGcUGUGCuGGAg -3'
miRNA:   3'- -CACGCG-CCG-CCGCuUGC-ACGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 15250 0.73 0.169776
Target:  5'- gGUGCGUGGCGGCG-GCGgccagcUGCGCGcuggcguGGAu -3'
miRNA:   3'- -CACGCGCCGCCGCuUGC------ACGCGU-------CCU- -5'
18995 5' -61.1 NC_004684.1 + 8822 0.72 0.179246
Target:  5'- -gGCGCGGCGGCGAACaucgggaucaGCGCcgccauGGAg -3'
miRNA:   3'- caCGCGCCGCCGCUUGca--------CGCGu-----CCU- -5'
18995 5' -61.1 NC_004684.1 + 48381 0.72 0.193585
Target:  5'- gGUGCGCgaaGGcCGGUgGGACGUGCGCAuGGu -3'
miRNA:   3'- -CACGCG---CC-GCCG-CUUGCACGCGU-CCu -5'
18995 5' -61.1 NC_004684.1 + 59948 0.72 0.198584
Target:  5'- cGUGCGCguugugcuGGCGGCGcuCGUGcCGCAcccGGAc -3'
miRNA:   3'- -CACGCG--------CCGCCGCuuGCAC-GCGU---CCU- -5'
18995 5' -61.1 NC_004684.1 + 29761 0.72 0.198584
Target:  5'- -cGCGCGGUcuGGuCGGcCGcGCGCAGGAg -3'
miRNA:   3'- caCGCGCCG--CC-GCUuGCaCGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 64932 0.72 0.203695
Target:  5'- gGUG-GCGGCGGUGAGCGccuggcggGCGguGGc -3'
miRNA:   3'- -CACgCGCCGCCGCUUGCa-------CGCguCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.