Results 21 - 40 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18995 | 5' | -61.1 | NC_004684.1 | + | 45516 | 0.72 | 0.207341 |
Target: 5'- aUGaGCGGCGGCGacaccgaggccaagGugGUGCGcCAGGGu -3' miRNA: 3'- cACgCGCCGCCGC--------------UugCACGC-GUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 46299 | 0.72 | 0.20892 |
Target: 5'- -aGCGCGuuGCGGCGcuuGGCGUGCGCcagcgucuGGAg -3' miRNA: 3'- caCGCGC--CGCCGC---UUGCACGCGu-------CCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 10233 | 0.71 | 0.225291 |
Target: 5'- gGUGCGCGaGCaGCuGGcCGUGCGCGuGGAg -3' miRNA: 3'- -CACGCGC-CGcCG-CUuGCACGCGU-CCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 22449 | 0.71 | 0.225291 |
Target: 5'- -gGCGCGGCGGCGAucccGCccGCGCuccAGGc -3' miRNA: 3'- caCGCGCCGCCGCU----UGcaCGCG---UCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 54346 | 0.71 | 0.227555 |
Target: 5'- -aGCGCGGCGGUGGAgauguuggcaagugcCGgGgGCGGGGu -3' miRNA: 3'- caCGCGCCGCCGCUU---------------GCaCgCGUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 65444 | 0.71 | 0.230986 |
Target: 5'- -cGUGCGGCGcGCGGccacCGUGCGCcGGu -3' miRNA: 3'- caCGCGCCGC-CGCUu---GCACGCGuCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 3787 | 0.71 | 0.235044 |
Target: 5'- -aGCGCGGCGGCGcuGgcgaucuccugccaGCGUGCcaaCAGGGu -3' miRNA: 3'- caCGCGCCGCCGC--U--------------UGCACGc--GUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 54607 | 0.7 | 0.260658 |
Target: 5'- -cGCGCGuGCGcGCGuACGUGUGCgcgcgcgAGGAc -3' miRNA: 3'- caCGCGC-CGC-CGCuUGCACGCG-------UCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 60604 | 0.7 | 0.267083 |
Target: 5'- gGUGCGCaGGCcggucacccGGCGcACGUcgcccauGCGCAGGGu -3' miRNA: 3'- -CACGCG-CCG---------CCGCuUGCA-------CGCGUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 43487 | 0.7 | 0.267733 |
Target: 5'- -gGUGCGGCgGGCGcAGCG-GCaGCAGGu -3' miRNA: 3'- caCGCGCCG-CCGC-UUGCaCG-CGUCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 36844 | 0.7 | 0.267733 |
Target: 5'- -gGCGCGGCccuGGCG-GCGUcaGCGcCGGGAc -3' miRNA: 3'- caCGCGCCG---CCGCuUGCA--CGC-GUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 51579 | 0.7 | 0.267733 |
Target: 5'- cUGCGCGGCGGCGAcCGgGUGguccaAGGu -3' miRNA: 3'- cACGCGCCGCCGCUuGCaCGCg----UCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 19446 | 0.7 | 0.267733 |
Target: 5'- cGUGCGCccaugcccgGGCGGCGGugGcccgcgcgacaUGCGCcccuGGAg -3' miRNA: 3'- -CACGCG---------CCGCCGCUugC-----------ACGCGu---CCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 18428 | 0.7 | 0.267733 |
Target: 5'- -gGCGCaccGGCGGCcGACGUGgcucccgaGCAGGAc -3' miRNA: 3'- caCGCG---CCGCCGcUUGCACg-------CGUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 46601 | 0.7 | 0.274298 |
Target: 5'- -gGCGaCGGCGGCGGuuugguACGaGCGCAGu- -3' miRNA: 3'- caCGC-GCCGCCGCU------UGCaCGCGUCcu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 22187 | 0.7 | 0.280991 |
Target: 5'- ---gGCGGCGGCGAccgccuuCGgacugGCGCAGGu -3' miRNA: 3'- cacgCGCCGCCGCUu------GCa----CGCGUCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 33489 | 0.69 | 0.287813 |
Target: 5'- gGUGgaCGCGGCGGCGGcccuguacucGCGgGCGguGGc -3' miRNA: 3'- -CAC--GCGCCGCCGCU----------UGCaCGCguCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 2265 | 0.69 | 0.287813 |
Target: 5'- -aGCGCGGCGGCGGGCauUGcCGCcagccuGGGc -3' miRNA: 3'- caCGCGCCGCCGCUUGc-AC-GCGu-----CCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 20448 | 0.69 | 0.287813 |
Target: 5'- uGUGCaCGGCGGCGAagAUGcUGCGCAc-- -3' miRNA: 3'- -CACGcGCCGCCGCU--UGC-ACGCGUccu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 64542 | 0.69 | 0.287813 |
Target: 5'- -gGCuCGGCGGCcuuggugaccGggUugGUGCGCAGGAu -3' miRNA: 3'- caCGcGCCGCCG----------CuuG--CACGCGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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