miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 39037 0.66 0.441897
Target:  5'- -gGCuCGGCGGUGuccauUGUGCGCcGGGu -3'
miRNA:   3'- caCGcGCCGCCGCuu---GCACGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 33833 0.66 0.441897
Target:  5'- uGUGCccgGCGGCGGCGGcaACG-GgGCcaaccaAGGAu -3'
miRNA:   3'- -CACG---CGCCGCCGCU--UGCaCgCG------UCCU- -5'
18995 5' -61.1 NC_004684.1 + 28273 0.66 0.440971
Target:  5'- gGUGCGCgaGGCcGCuGGCGUGgugcucaCGCAGGAg -3'
miRNA:   3'- -CACGCG--CCGcCGcUUGCAC-------GCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 23333 0.66 0.432679
Target:  5'- uUGCGUGGUGGCGucGCGgaGCcauuuCAGGAa -3'
miRNA:   3'- cACGCGCCGCCGCu-UGCa-CGc----GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 57158 0.66 0.432679
Target:  5'- aUG-GCGGCGGUGGccgacgcgcACGcucggGCGCAGGc -3'
miRNA:   3'- cACgCGCCGCCGCU---------UGCa----CGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 61495 0.66 0.432679
Target:  5'- -cGCGCaGGCGGCGGcgcuCGaUGCGCGc-- -3'
miRNA:   3'- caCGCG-CCGCCGCUu---GC-ACGCGUccu -5'
18995 5' -61.1 NC_004684.1 + 24261 0.66 0.429936
Target:  5'- uUGgGCGGCGGCaccgccugcGGACccugcaccggagcgGUGCGCAGcGGg -3'
miRNA:   3'- cACgCGCCGCCG---------CUUG--------------CACGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 66681 0.67 0.42448
Target:  5'- gGUGCccaggucuucccaccCGGCGGCGGucuuGCGcUGCGCGGcGAa -3'
miRNA:   3'- -CACGc--------------GCCGCCGCU----UGC-ACGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 66881 0.67 0.423574
Target:  5'- -aGCGcCGGUGGCGAccuuCG-GCGCGGc- -3'
miRNA:   3'- caCGC-GCCGCCGCUu---GCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 9660 0.67 0.423574
Target:  5'- -cGgGCGGCGGUGAA-GcGCGCGGu- -3'
miRNA:   3'- caCgCGCCGCCGCUUgCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 28579 0.67 0.423574
Target:  5'- gGUGUGCGGCGGCu-GCcUGCcgguCGGGGa -3'
miRNA:   3'- -CACGCGCCGCCGcuUGcACGc---GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 48732 0.67 0.423574
Target:  5'- uUGC-CGGUGGCG-AUGUG-GCAGGc -3'
miRNA:   3'- cACGcGCCGCCGCuUGCACgCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 6360 0.67 0.423574
Target:  5'- aUGU-CGGCGGCGAugGccugcgcguUGCGCAGc- -3'
miRNA:   3'- cACGcGCCGCCGCUugC---------ACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 25643 0.67 0.414585
Target:  5'- uGUGCcguucgagaGCGGCGGCGGuaccGgGCAGGGc -3'
miRNA:   3'- -CACG---------CGCCGCCGCUugcaCgCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 47129 0.67 0.414585
Target:  5'- cGUGCGCcucGGUGGCGuagGCGgccccgGUGCccAGGAg -3'
miRNA:   3'- -CACGCG---CCGCCGCu--UGCa-----CGCG--UCCU- -5'
18995 5' -61.1 NC_004684.1 + 31732 0.67 0.414585
Target:  5'- -aGCGUcccGGCGGgGAugGUGUaGCGcGGAc -3'
miRNA:   3'- caCGCG---CCGCCgCUugCACG-CGU-CCU- -5'
18995 5' -61.1 NC_004684.1 + 37234 0.67 0.414585
Target:  5'- -cGCGCucccagaacuGGCGGCGca-GUGCGCuGGc -3'
miRNA:   3'- caCGCG----------CCGCCGCuugCACGCGuCCu -5'
18995 5' -61.1 NC_004684.1 + 63588 0.67 0.405714
Target:  5'- cUGCGCGGCgcGGCGGugGUuacCGCcucGGAc -3'
miRNA:   3'- cACGCGCCG--CCGCUugCAc--GCGu--CCU- -5'
18995 5' -61.1 NC_004684.1 + 16790 0.67 0.396964
Target:  5'- -gGUGCGGC-GCGu-CGUGUGguGGGc -3'
miRNA:   3'- caCGCGCCGcCGCuuGCACGCguCCU- -5'
18995 5' -61.1 NC_004684.1 + 65546 0.67 0.396964
Target:  5'- -aGCGCGGUGGCGuaccCGUaguaauacCGCAGGu -3'
miRNA:   3'- caCGCGCCGCCGCuu--GCAc-------GCGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.