miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 16790 0.67 0.396964
Target:  5'- -gGUGCGGC-GCGu-CGUGUGguGGGc -3'
miRNA:   3'- caCGCGCCGcCGCuuGCACGCguCCU- -5'
18995 5' -61.1 NC_004684.1 + 65546 0.67 0.396964
Target:  5'- -aGCGCGGUGGCGuaccCGUaguaauacCGCAGGu -3'
miRNA:   3'- caCGCGCCGCCGCuu--GCAc-------GCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 35424 0.67 0.388335
Target:  5'- -aGCGCGGgaGGCGAugGUccCGCcGGAc -3'
miRNA:   3'- caCGCGCCg-CCGCUugCAc-GCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 57576 0.67 0.388335
Target:  5'- cUGCGU-GCGGCGcuugucGACgGUGgGCAGGAc -3'
miRNA:   3'- cACGCGcCGCCGC------UUG-CACgCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 7592 0.67 0.388335
Target:  5'- -cGCGCGGCGGCcAGC--GCGUAGa- -3'
miRNA:   3'- caCGCGCCGCCGcUUGcaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 6420 0.67 0.378987
Target:  5'- -aGCuCGGCGGCGGcgugaacgccuucGCGcuuggccgagGCGCAGGGg -3'
miRNA:   3'- caCGcGCCGCCGCU-------------UGCa---------CGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 33060 0.68 0.371452
Target:  5'- uUGCGUcgaGGCGGCGAgguuggccagcGCGaGCGCcuGGAg -3'
miRNA:   3'- cACGCG---CCGCCGCU-----------UGCaCGCGu-CCU- -5'
18995 5' -61.1 NC_004684.1 + 58455 0.68 0.371452
Target:  5'- cGUGCGgGGCGGCaacCG-GCGCGGc- -3'
miRNA:   3'- -CACGCgCCGCCGcuuGCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 47193 0.68 0.3632
Target:  5'- -cGCuGC-GCGGCGAACGgugcgGCGguGGu -3'
miRNA:   3'- caCG-CGcCGCCGCUUGCa----CGCguCCu -5'
18995 5' -61.1 NC_004684.1 + 38961 0.68 0.355077
Target:  5'- -aGCGUGGCGGCGuugaaccgcGCGUaaucgguguugaGCGcCAGGGc -3'
miRNA:   3'- caCGCGCCGCCGCu--------UGCA------------CGC-GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 6161 0.68 0.355077
Target:  5'- ---gGCGGCGGCcAGCGUGCgGCGGu- -3'
miRNA:   3'- cacgCGCCGCCGcUUGCACG-CGUCcu -5'
18995 5' -61.1 NC_004684.1 + 31485 0.68 0.347082
Target:  5'- -cGCGuUGGCcugguuGGCGAGCGUGaUGguGGAc -3'
miRNA:   3'- caCGC-GCCG------CCGCUUGCAC-GCguCCU- -5'
18995 5' -61.1 NC_004684.1 + 21249 0.68 0.347082
Target:  5'- cGUGgacaGCuGCGGCGuauuucGCGUGCGCGGuGAc -3'
miRNA:   3'- -CACg---CGcCGCCGCu-----UGCACGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 59120 0.68 0.347082
Target:  5'- -aGCGCcgcaggucGCGGCGcACGUG-GCGGGAc -3'
miRNA:   3'- caCGCGc-------CGCCGCuUGCACgCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 20120 0.68 0.347082
Target:  5'- cUGgGCGGCGGCaccaaGAACGUGCGg---- -3'
miRNA:   3'- cACgCGCCGCCG-----CUUGCACGCguccu -5'
18995 5' -61.1 NC_004684.1 + 66529 0.68 0.342347
Target:  5'- -aGCGCGGCccGGCGGGCacggcgguaggcguuGUGCGCcucaccGGAa -3'
miRNA:   3'- caCGCGCCG--CCGCUUG---------------CACGCGu-----CCU- -5'
18995 5' -61.1 NC_004684.1 + 59456 0.68 0.339216
Target:  5'- uGUGCGCcggucGGCGGCGAuguccaccACcUGCGCGGc- -3'
miRNA:   3'- -CACGCG-----CCGCCGCU--------UGcACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 46739 0.68 0.329186
Target:  5'- uUGagGCGGCGGUauuguccagcgugcGGACGcaggcgGCGCAGGAa -3'
miRNA:   3'- cACg-CGCCGCCG--------------CUUGCa-----CGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 45881 0.69 0.323877
Target:  5'- uGUGCGCgccguccacgcuGGCGGCGAAacgauguugGUGCGCucgcGGGc -3'
miRNA:   3'- -CACGCG------------CCGCCGCUUg--------CACGCGu---CCU- -5'
18995 5' -61.1 NC_004684.1 + 12018 0.69 0.323877
Target:  5'- --uCGCGGCGGCGGugGccaagGCcaugcucgaccaGCAGGAg -3'
miRNA:   3'- cacGCGCCGCCGCUugCa----CG------------CGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.