miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 41568 0.66 0.449351
Target:  5'- gGUGCGacaccuugcuuCGGCGGCGGcauuuccugGCGCAGGu -3'
miRNA:   3'- -CACGC-----------GCCGCCGCUugca-----CGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 10982 0.66 0.470199
Target:  5'- -aGCGCGaucaccgcGuCGGUGAACGUGCGgaAGGu -3'
miRNA:   3'- caCGCGC--------C-GCCGCUUGCACGCg-UCCu -5'
18995 5' -61.1 NC_004684.1 + 21376 0.66 0.470199
Target:  5'- uUGCGCagauacGGCcgGGCGcGCGUGC-CGGGGu -3'
miRNA:   3'- cACGCG------CCG--CCGCuUGCACGcGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 13022 0.66 0.470199
Target:  5'- gGUGcCGaCGGCGGCGAaguuggccgACG-GCGCAccGGc -3'
miRNA:   3'- -CAC-GC-GCCGCCGCU---------UGCaCGCGU--CCu -5'
18995 5' -61.1 NC_004684.1 + 66266 0.66 0.470199
Target:  5'- -aGCGCGGCGucgucccaGCGGACG-GCcacguuGCGGGu -3'
miRNA:   3'- caCGCGCCGC--------CGCUUGCaCG------CGUCCu -5'
18995 5' -61.1 NC_004684.1 + 59700 0.66 0.470199
Target:  5'- cUGCGCGG-GGUGcGgGUGCGCAu-- -3'
miRNA:   3'- cACGCGCCgCCGCuUgCACGCGUccu -5'
18995 5' -61.1 NC_004684.1 + 10248 0.66 0.441897
Target:  5'- -aGCGCGGUGGCcAGCG-GCgGCuGGc -3'
miRNA:   3'- caCGCGCCGCCGcUUGCaCG-CGuCCu -5'
18995 5' -61.1 NC_004684.1 + 31732 0.67 0.414585
Target:  5'- -aGCGUcccGGCGGgGAugGUGUaGCGcGGAc -3'
miRNA:   3'- caCGCG---CCGCCgCUugCACG-CGU-CCU- -5'
18995 5' -61.1 NC_004684.1 + 20890 0.67 0.396964
Target:  5'- -cGuCGCGGCuGGCGuuGCGUGcCGguGGc -3'
miRNA:   3'- caC-GCGCCG-CCGCu-UGCAC-GCguCCu -5'
18995 5' -61.1 NC_004684.1 + 7592 0.67 0.388335
Target:  5'- -cGCGCGGCGGCcAGC--GCGUAGa- -3'
miRNA:   3'- caCGCGCCGCCGcUUGcaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 57576 0.67 0.388335
Target:  5'- cUGCGU-GCGGCGcuugucGACgGUGgGCAGGAc -3'
miRNA:   3'- cACGCGcCGCCGC------UUG-CACgCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 25643 0.67 0.414585
Target:  5'- uGUGCcguucgagaGCGGCGGCGGuaccGgGCAGGGc -3'
miRNA:   3'- -CACG---------CGCCGCCGCUugcaCgCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 65546 0.67 0.396964
Target:  5'- -aGCGCGGUGGCGuaccCGUaguaauacCGCAGGu -3'
miRNA:   3'- caCGCGCCGCCGCuu--GCAc-------GCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 63588 0.67 0.405714
Target:  5'- cUGCGCGGCgcGGCGGugGUuacCGCcucGGAc -3'
miRNA:   3'- cACGCGCCG--CCGCUugCAc--GCGu--CCU- -5'
18995 5' -61.1 NC_004684.1 + 47129 0.67 0.414585
Target:  5'- cGUGCGCcucGGUGGCGuagGCGgccccgGUGCccAGGAg -3'
miRNA:   3'- -CACGCG---CCGCCGCu--UGCa-----CGCG--UCCU- -5'
18995 5' -61.1 NC_004684.1 + 9660 0.67 0.423574
Target:  5'- -cGgGCGGCGGUGAA-GcGCGCGGu- -3'
miRNA:   3'- caCgCGCCGCCGCUUgCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 66881 0.67 0.423574
Target:  5'- -aGCGcCGGUGGCGAccuuCG-GCGCGGc- -3'
miRNA:   3'- caCGC-GCCGCCGCUu---GCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 6360 0.67 0.423574
Target:  5'- aUGU-CGGCGGCGAugGccugcgcguUGCGCAGc- -3'
miRNA:   3'- cACGcGCCGCCGCUugC---------ACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 48732 0.67 0.423574
Target:  5'- uUGC-CGGUGGCG-AUGUG-GCAGGc -3'
miRNA:   3'- cACGcGCCGCCGCuUGCACgCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 66681 0.67 0.42448
Target:  5'- gGUGCccaggucuucccaccCGGCGGCGGucuuGCGcUGCGCGGcGAa -3'
miRNA:   3'- -CACGc--------------GCCGCCGCU----UGC-ACGCGUC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.