miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 23714 0.65 0.486641
Target:  5'- cUGgGCGGCGGCGcgcucaacaucgcuGGCG-GCGCAc-- -3'
miRNA:   3'- cACgCGCCGCCGC--------------UUGCaCGCGUccu -5'
18995 5' -61.1 NC_004684.1 + 39037 0.66 0.441897
Target:  5'- -gGCuCGGCGGUGuccauUGUGCGCcGGGu -3'
miRNA:   3'- caCGcGCCGCCGCuu---GCACGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 24261 0.66 0.429936
Target:  5'- uUGgGCGGCGGCaccgccugcGGACccugcaccggagcgGUGCGCAGcGGg -3'
miRNA:   3'- cACgCGCCGCCG---------CUUG--------------CACGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 41568 0.66 0.449351
Target:  5'- gGUGCGacaccuugcuuCGGCGGCGGcauuuccugGCGCAGGu -3'
miRNA:   3'- -CACGC-----------GCCGCCGCUugca-----CGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 61495 0.66 0.432679
Target:  5'- -cGCGCaGGCGGCGGcgcuCGaUGCGCGc-- -3'
miRNA:   3'- caCGCG-CCGCCGCUu---GC-ACGCGUccu -5'
18995 5' -61.1 NC_004684.1 + 28273 0.66 0.440971
Target:  5'- gGUGCGCgaGGCcGCuGGCGUGgugcucaCGCAGGAg -3'
miRNA:   3'- -CACGCG--CCGcCGcUUGCAC-------GCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 33833 0.66 0.441897
Target:  5'- uGUGCccgGCGGCGGCGGcaACG-GgGCcaaccaAGGAu -3'
miRNA:   3'- -CACG---CGCCGCCGCU--UGCaCgCG------UCCU- -5'
18995 5' -61.1 NC_004684.1 + 57158 0.66 0.432679
Target:  5'- aUG-GCGGCGGUGGccgacgcgcACGcucggGCGCAGGc -3'
miRNA:   3'- cACgCGCCGCCGCU---------UGCa----CGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 25563 0.66 0.479837
Target:  5'- -gGCGCGGUGGa--AgGUGCGCuacccGGAg -3'
miRNA:   3'- caCGCGCCGCCgcuUgCACGCGu----CCU- -5'
18995 5' -61.1 NC_004684.1 + 49545 0.66 0.451225
Target:  5'- uGUGCGCGGUGGCcGAcuuCGggcugGCGUGGc- -3'
miRNA:   3'- -CACGCGCCGCCG-CUu--GCa----CGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 59700 0.66 0.470199
Target:  5'- cUGCGCGG-GGUGcGgGUGCGCAu-- -3'
miRNA:   3'- cACGCGCCgCCGCuUgCACGCGUccu -5'
18995 5' -61.1 NC_004684.1 + 10248 0.66 0.441897
Target:  5'- -aGCGCGGUGGCcAGCG-GCgGCuGGc -3'
miRNA:   3'- caCGCGCCGCCGcUUGCaCG-CGuCCu -5'
18995 5' -61.1 NC_004684.1 + 67159 0.66 0.441897
Target:  5'- --uCGUGGCGGCGAuguACGgcaugGUGCcGGAc -3'
miRNA:   3'- cacGCGCCGCCGCU---UGCa----CGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 16749 0.66 0.479837
Target:  5'- -aGCGCGGCuGGCcugGAACu--CGCGGGGa -3'
miRNA:   3'- caCGCGCCG-CCG---CUUGcacGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 59054 0.66 0.441897
Target:  5'- -aGCGCGGCagcucGGCGGACaGggcccgGCGCAaGGc -3'
miRNA:   3'- caCGCGCCG-----CCGCUUG-Ca-----CGCGU-CCu -5'
18995 5' -61.1 NC_004684.1 + 27169 0.66 0.479837
Target:  5'- cUGgGCGGCGauguccacgccuGCGGACccgGCGCuGGAg -3'
miRNA:   3'- cACgCGCCGC------------CGCUUGca-CGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 23333 0.66 0.432679
Target:  5'- uUGCGUGGUGGCGucGCGgaGCcauuuCAGGAa -3'
miRNA:   3'- cACGCGCCGCCGCu-UGCa-CGc----GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 66266 0.66 0.470199
Target:  5'- -aGCGCGGCGucgucccaGCGGACG-GCcacguuGCGGGu -3'
miRNA:   3'- caCGCGCCGC--------CGCUUGCaCG------CGUCCu -5'
18995 5' -61.1 NC_004684.1 + 5791 0.66 0.459712
Target:  5'- cUGCGCcaGGCGuGCGAggucgggACGUGcCGCAccguGGAg -3'
miRNA:   3'- cACGCG--CCGC-CGCU-------UGCAC-GCGU----CCU- -5'
18995 5' -61.1 NC_004684.1 + 60067 0.66 0.479837
Target:  5'- -cGCGCGGCccGGCG-GCccGUGCGGGc -3'
miRNA:   3'- caCGCGCCG--CCGCuUGcaCGCGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.