miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 18428 0.7 0.267733
Target:  5'- -gGCGCaccGGCGGCcGACGUGgcucccgaGCAGGAc -3'
miRNA:   3'- caCGCG---CCGCCGcUUGCACg-------CGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 10233 0.71 0.225291
Target:  5'- gGUGCGCGaGCaGCuGGcCGUGCGCGuGGAg -3'
miRNA:   3'- -CACGCGC-CGcCG-CUuGCACGCGU-CCU- -5'
18995 5' -61.1 NC_004684.1 + 54346 0.71 0.227555
Target:  5'- -aGCGCGGCGGUGGAgauguuggcaagugcCGgGgGCGGGGu -3'
miRNA:   3'- caCGCGCCGCCGCUU---------------GCaCgCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 65444 0.71 0.230986
Target:  5'- -cGUGCGGCGcGCGGccacCGUGCGCcGGu -3'
miRNA:   3'- caCGCGCCGC-CGCUu---GCACGCGuCCu -5'
18995 5' -61.1 NC_004684.1 + 54607 0.7 0.260658
Target:  5'- -cGCGCGuGCGcGCGuACGUGUGCgcgcgcgAGGAc -3'
miRNA:   3'- caCGCGC-CGC-CGCuUGCACGCG-------UCCU- -5'
18995 5' -61.1 NC_004684.1 + 60604 0.7 0.267083
Target:  5'- gGUGCGCaGGCcggucacccGGCGcACGUcgcccauGCGCAGGGu -3'
miRNA:   3'- -CACGCG-CCG---------CCGCuUGCA-------CGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 51579 0.7 0.267733
Target:  5'- cUGCGCGGCGGCGAcCGgGUGguccaAGGu -3'
miRNA:   3'- cACGCGCCGCCGCUuGCaCGCg----UCCu -5'
18995 5' -61.1 NC_004684.1 + 19446 0.7 0.267733
Target:  5'- cGUGCGCccaugcccgGGCGGCGGugGcccgcgcgacaUGCGCcccuGGAg -3'
miRNA:   3'- -CACGCG---------CCGCCGCUugC-----------ACGCGu---CCU- -5'
18995 5' -61.1 NC_004684.1 + 43487 0.7 0.267733
Target:  5'- -gGUGCGGCgGGCGcAGCG-GCaGCAGGu -3'
miRNA:   3'- caCGCGCCG-CCGC-UUGCaCG-CGUCCu -5'
18995 5' -61.1 NC_004684.1 + 22449 0.71 0.225291
Target:  5'- -gGCGCGGCGGCGAucccGCccGCGCuccAGGc -3'
miRNA:   3'- caCGCGCCGCCGCU----UGcaCGCG---UCCu -5'
18995 5' -61.1 NC_004684.1 + 46299 0.72 0.20892
Target:  5'- -aGCGCGuuGCGGCGcuuGGCGUGCGCcagcgucuGGAg -3'
miRNA:   3'- caCGCGC--CGCCGC---UUGCACGCGu-------CCU- -5'
18995 5' -61.1 NC_004684.1 + 64932 0.72 0.203695
Target:  5'- gGUG-GCGGCGGUGAGCGccuggcggGCGguGGc -3'
miRNA:   3'- -CACgCGCCGCCGCUUGCa-------CGCguCCu -5'
18995 5' -61.1 NC_004684.1 + 40733 0.75 0.120881
Target:  5'- -aGCGCGGCGG-GGGCGgugGCGguGGu -3'
miRNA:   3'- caCGCGCCGCCgCUUGCa--CGCguCCu -5'
18995 5' -61.1 NC_004684.1 + 62983 0.75 0.124148
Target:  5'- gGUGCGCacguggccGGUGGCcggGAACGcgaUGCGCAGGAu -3'
miRNA:   3'- -CACGCG--------CCGCCG---CUUGC---ACGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 26583 0.75 0.127497
Target:  5'- -cGCGCGGCGGU----GUGCGCGGGu -3'
miRNA:   3'- caCGCGCCGCCGcuugCACGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 63865 0.73 0.154985
Target:  5'- cGUGCGCGGUGGCGGccuucaucgggcccaGCGgUGC-CAGGu -3'
miRNA:   3'- -CACGCGCCGCCGCU---------------UGC-ACGcGUCCu -5'
18995 5' -61.1 NC_004684.1 + 11879 0.73 0.154985
Target:  5'- -gGCGCuGGCGGUGAacacaccgggauucaACGUGCGCGGc- -3'
miRNA:   3'- caCGCG-CCGCCGCU---------------UGCACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 34085 0.73 0.161176
Target:  5'- -gGCGCGGCGggcGCGAACaacgcgaGUGCGCAGa- -3'
miRNA:   3'- caCGCGCCGC---CGCUUG-------CACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 55411 0.73 0.161176
Target:  5'- cUGCGCuGGCGGUGGagaccacccagcaGCGUGCGCcGGu -3'
miRNA:   3'- cACGCG-CCGCCGCU-------------UGCACGCGuCCu -5'
18995 5' -61.1 NC_004684.1 + 59948 0.72 0.198584
Target:  5'- cGUGCGCguugugcuGGCGGCGcuCGUGcCGCAcccGGAc -3'
miRNA:   3'- -CACGCG--------CCGCCGCuuGCAC-GCGU---CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.