miRNA display CGI


Results 1 - 20 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 13721 1.08 0.00042
Target:  5'- gGUGCGCGGCGGCGAACGUGCGCAGGAa -3'
miRNA:   3'- -CACGCGCCGCCGCUUGCACGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 31485 0.68 0.347082
Target:  5'- -cGCGuUGGCcugguuGGCGAGCGUGaUGguGGAc -3'
miRNA:   3'- caCGC-GCCG------CCGCUUGCAC-GCguCCU- -5'
18995 5' -61.1 NC_004684.1 + 58455 0.68 0.371452
Target:  5'- cGUGCGgGGCGGCaacCG-GCGCGGc- -3'
miRNA:   3'- -CACGCgCCGCCGcuuGCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 27169 0.66 0.479837
Target:  5'- cUGgGCGGCGauguccacgccuGCGGACccgGCGCuGGAg -3'
miRNA:   3'- cACgCGCCGC------------CGCUUGca-CGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 59625 0.73 0.153371
Target:  5'- -cGCGCuGGCGGUgcaGGACcuGUGCGCAGGc -3'
miRNA:   3'- caCGCG-CCGCCG---CUUG--CACGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 62439 0.73 0.165856
Target:  5'- gGUGCGCaGGCuGGCGcGCGcUGUGCuGGAg -3'
miRNA:   3'- -CACGCG-CCG-CCGCuUGC-ACGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 8822 0.72 0.179246
Target:  5'- -gGCGCGGCGGCGAACaucgggaucaGCGCcgccauGGAg -3'
miRNA:   3'- caCGCGCCGCCGCUUGca--------CGCGu-----CCU- -5'
18995 5' -61.1 NC_004684.1 + 48381 0.72 0.193585
Target:  5'- gGUGCGCgaaGGcCGGUgGGACGUGCGCAuGGu -3'
miRNA:   3'- -CACGCG---CC-GCCG-CUUGCACGCGU-CCu -5'
18995 5' -61.1 NC_004684.1 + 3787 0.71 0.235044
Target:  5'- -aGCGCGGCGGCGcuGgcgaucuccugccaGCGUGCcaaCAGGGu -3'
miRNA:   3'- caCGCGCCGCCGC--U--------------UGCACGc--GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 21249 0.68 0.347082
Target:  5'- cGUGgacaGCuGCGGCGuauuucGCGUGCGCGGuGAc -3'
miRNA:   3'- -CACg---CGcCGCCGCu-----UGCACGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 42706 0.69 0.301847
Target:  5'- -gGCgGCGGCGGgGGAgGUGC-CGGGu -3'
miRNA:   3'- caCG-CGCCGCCgCUUgCACGcGUCCu -5'
18995 5' -61.1 NC_004684.1 + 45516 0.72 0.207341
Target:  5'- aUGaGCGGCGGCGacaccgaggccaagGugGUGCGcCAGGGu -3'
miRNA:   3'- cACgCGCCGCCGC--------------UugCACGC-GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 40707 0.78 0.072237
Target:  5'- -cGCGCGGCGGUGAucaACGUGgUGCuGGAc -3'
miRNA:   3'- caCGCGCCGCCGCU---UGCAC-GCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 52796 0.69 0.30906
Target:  5'- -aGCGUGGCgaGGCcGACGgGCGCgAGGAc -3'
miRNA:   3'- caCGCGCCG--CCGcUUGCaCGCG-UCCU- -5'
18995 5' -61.1 NC_004684.1 + 42227 0.74 0.143247
Target:  5'- cGUGCGUGGUGGCGucgGCGUugaacaccaugucgcGCGCGGuGAa -3'
miRNA:   3'- -CACGCGCCGCCGCu--UGCA---------------CGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 29761 0.72 0.198584
Target:  5'- -cGCGCGGUcuGGuCGGcCGcGCGCAGGAg -3'
miRNA:   3'- caCGCGCCG--CC-GCUuGCaCGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 65844 0.69 0.316403
Target:  5'- -cGCGCGGCGGCcAACGccCGCgAGGc -3'
miRNA:   3'- caCGCGCCGCCGcUUGCacGCG-UCCu -5'
18995 5' -61.1 NC_004684.1 + 38961 0.68 0.355077
Target:  5'- -aGCGUGGCGGCGuugaaccgcGCGUaaucgguguugaGCGcCAGGGc -3'
miRNA:   3'- caCGCGCCGCCGCu--------UGCA------------CGC-GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 25471 0.74 0.145528
Target:  5'- uGUGCGCGGCGGCGua-G-GCGCugaccGGGu -3'
miRNA:   3'- -CACGCGCCGCCGCuugCaCGCGu----CCU- -5'
18995 5' -61.1 NC_004684.1 + 15250 0.73 0.169776
Target:  5'- gGUGCGUGGCGGCG-GCGgccagcUGCGCGcuggcguGGAu -3'
miRNA:   3'- -CACGCGCCGCCGCuUGC------ACGCGU-------CCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.