miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 67159 0.66 0.441897
Target:  5'- --uCGUGGCGGCGAuguACGgcaugGUGCcGGAc -3'
miRNA:   3'- cacGCGCCGCCGCU---UGCa----CGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 66881 0.67 0.423574
Target:  5'- -aGCGcCGGUGGCGAccuuCG-GCGCGGc- -3'
miRNA:   3'- caCGC-GCCGCCGCUu---GCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 66681 0.67 0.42448
Target:  5'- gGUGCccaggucuucccaccCGGCGGCGGucuuGCGcUGCGCGGcGAa -3'
miRNA:   3'- -CACGc--------------GCCGCCGCU----UGC-ACGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 66529 0.68 0.342347
Target:  5'- -aGCGCGGCccGGCGGGCacggcgguaggcguuGUGCGCcucaccGGAa -3'
miRNA:   3'- caCGCGCCG--CCGCUUG---------------CACGCGu-----CCU- -5'
18995 5' -61.1 NC_004684.1 + 66266 0.66 0.470199
Target:  5'- -aGCGCGGCGucgucccaGCGGACG-GCcacguuGCGGGu -3'
miRNA:   3'- caCGCGCCGC--------CGCUUGCaCG------CGUCCu -5'
18995 5' -61.1 NC_004684.1 + 65844 0.69 0.316403
Target:  5'- -cGCGCGGCGGCcAACGccCGCgAGGc -3'
miRNA:   3'- caCGCGCCGCCGcUUGCacGCG-UCCu -5'
18995 5' -61.1 NC_004684.1 + 65773 0.69 0.294765
Target:  5'- -cGCGCGcCGGUGGGCGcGCGCAcGGc -3'
miRNA:   3'- caCGCGCcGCCGCUUGCaCGCGU-CCu -5'
18995 5' -61.1 NC_004684.1 + 65546 0.67 0.396964
Target:  5'- -aGCGCGGUGGCGuaccCGUaguaauacCGCAGGu -3'
miRNA:   3'- caCGCGCCGCCGCuu--GCAc-------GCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 65444 0.71 0.230986
Target:  5'- -cGUGCGGCGcGCGGccacCGUGCGCcGGu -3'
miRNA:   3'- caCGCGCCGC-CGCUu---GCACGCGuCCu -5'
18995 5' -61.1 NC_004684.1 + 64932 0.72 0.203695
Target:  5'- gGUG-GCGGCGGUGAGCGccuggcggGCGguGGc -3'
miRNA:   3'- -CACgCGCCGCCGCUUGCa-------CGCguCCu -5'
18995 5' -61.1 NC_004684.1 + 64542 0.69 0.287813
Target:  5'- -gGCuCGGCGGCcuuggugaccGggUugGUGCGCAGGAu -3'
miRNA:   3'- caCGcGCCGCCG----------CuuG--CACGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 63865 0.73 0.154985
Target:  5'- cGUGCGCGGUGGCGGccuucaucgggcccaGCGgUGC-CAGGu -3'
miRNA:   3'- -CACGCGCCGCCGCU---------------UGC-ACGcGUCCu -5'
18995 5' -61.1 NC_004684.1 + 63588 0.67 0.405714
Target:  5'- cUGCGCGGCgcGGCGGugGUuacCGCcucGGAc -3'
miRNA:   3'- cACGCGCCG--CCGCUugCAc--GCGu--CCU- -5'
18995 5' -61.1 NC_004684.1 + 62983 0.75 0.124148
Target:  5'- gGUGCGCacguggccGGUGGCcggGAACGcgaUGCGCAGGAu -3'
miRNA:   3'- -CACGCG--------CCGCCG---CUUGC---ACGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 62439 0.73 0.165856
Target:  5'- gGUGCGCaGGCuGGCGcGCGcUGUGCuGGAg -3'
miRNA:   3'- -CACGCG-CCG-CCGCuUGC-ACGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 61495 0.66 0.432679
Target:  5'- -cGCGCaGGCGGCGGcgcuCGaUGCGCGc-- -3'
miRNA:   3'- caCGCG-CCGCCGCUu---GC-ACGCGUccu -5'
18995 5' -61.1 NC_004684.1 + 60711 0.66 0.46066
Target:  5'- cUGCGCaugGGCG-ACGUGCGCcGGGu -3'
miRNA:   3'- cACGCGccgCCGCuUGCACGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 60604 0.7 0.267083
Target:  5'- gGUGCGCaGGCcggucacccGGCGcACGUcgcccauGCGCAGGGu -3'
miRNA:   3'- -CACGCG-CCG---------CCGCuUGCA-------CGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 60067 0.66 0.479837
Target:  5'- -cGCGCGGCccGGCG-GCccGUGCGGGc -3'
miRNA:   3'- caCGCGCCG--CCGCuUGcaCGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 59948 0.72 0.198584
Target:  5'- cGUGCGCguugugcuGGCGGCGcuCGUGcCGCAcccGGAc -3'
miRNA:   3'- -CACGCG--------CCGCCGCuuGCAC-GCGU---CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.