miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18996 3' -54.8 NC_004684.1 + 64774 0.78 0.207293
Target:  5'- -cGUCGGUCUGGCUGUCGGcGAa-GCu -3'
miRNA:   3'- gaCAGCUAGACCGGCAGCCaCUagCG- -5'
18996 3' -54.8 NC_004684.1 + 7715 0.66 0.835233
Target:  5'- -cGUgGcgCUGGCCGugagccaccugaUCGGU-AUCGCc -3'
miRNA:   3'- gaCAgCuaGACCGGC------------AGCCAcUAGCG- -5'
18996 3' -54.8 NC_004684.1 + 66125 0.66 0.826434
Target:  5'- gCUGgCGAagUGGUCGcCGGUG-UCGUu -3'
miRNA:   3'- -GACaGCUagACCGGCaGCCACuAGCG- -5'
18996 3' -54.8 NC_004684.1 + 33327 0.66 0.817439
Target:  5'- aUGUCGAccucgCUGGCCaccUCGGUGcaguccggccUCGCc -3'
miRNA:   3'- gACAGCUa----GACCGGc--AGCCACu---------AGCG- -5'
18996 3' -54.8 NC_004684.1 + 11620 0.66 0.817439
Target:  5'- ---cCGAgCUGGCCGUCGGccgccUGAcCGUc -3'
miRNA:   3'- gacaGCUaGACCGGCAGCC-----ACUaGCG- -5'
18996 3' -54.8 NC_004684.1 + 14474 0.66 0.817439
Target:  5'- -gGUCGAUCgaggUGGuuGcCGGUaccacgccGGUCGCc -3'
miRNA:   3'- gaCAGCUAG----ACCggCaGCCA--------CUAGCG- -5'
18996 3' -54.8 NC_004684.1 + 11132 0.66 0.809184
Target:  5'- cCUGUUGAUCcacaagguggucgcGCCGUCGGUGGaccUgGCc -3'
miRNA:   3'- -GACAGCUAGac------------CGGCAGCCACU---AgCG- -5'
18996 3' -54.8 NC_004684.1 + 31350 0.66 0.7989
Target:  5'- gUGUCGGUC-GGCCa--GGaaauucUGGUCGCg -3'
miRNA:   3'- gACAGCUAGaCCGGcagCC------ACUAGCG- -5'
18996 3' -54.8 NC_004684.1 + 49218 0.67 0.779694
Target:  5'- -aGUCGGUCggugccgGGCCGggcgUCGGcacGUCGCc -3'
miRNA:   3'- gaCAGCUAGa------CCGGC----AGCCac-UAGCG- -5'
18996 3' -54.8 NC_004684.1 + 64299 0.67 0.779694
Target:  5'- -aGUgCGccCUGGCCGUCguGGUGGUUGa -3'
miRNA:   3'- gaCA-GCuaGACCGGCAG--CCACUAGCg -5'
18996 3' -54.8 NC_004684.1 + 57824 0.67 0.749813
Target:  5'- cCUGgucccggCGGUgCUGGCCGcCGGUacccgcccGAUUGCc -3'
miRNA:   3'- -GACa------GCUA-GACCGGCaGCCA--------CUAGCG- -5'
18996 3' -54.8 NC_004684.1 + 16300 0.71 0.548157
Target:  5'- aCUGUCGuAUCagaccgGGCCGcCGGUGAU-GUa -3'
miRNA:   3'- -GACAGC-UAGa-----CCGGCaGCCACUAgCG- -5'
18996 3' -54.8 NC_004684.1 + 9843 0.7 0.60134
Target:  5'- -cGUCGAUCaccGCCGcCGGUGAgcugcCGCc -3'
miRNA:   3'- gaCAGCUAGac-CGGCaGCCACUa----GCG- -5'
18996 3' -54.8 NC_004684.1 + 62099 0.69 0.619616
Target:  5'- -cGUCGuagCUGGCgcuggcgaacauggCGUCGGUGAacUCGUu -3'
miRNA:   3'- gaCAGCua-GACCG--------------GCAGCCACU--AGCG- -5'
18996 3' -54.8 NC_004684.1 + 52231 0.69 0.622846
Target:  5'- -cGUCGAUCaGGCCGU-GGUGccacaGCg -3'
miRNA:   3'- gaCAGCUAGaCCGGCAgCCACuag--CG- -5'
18996 3' -54.8 NC_004684.1 + 31208 0.68 0.718901
Target:  5'- cCUGgaagaCGAcCUGGCCGacgcCGGUGA-CGCc -3'
miRNA:   3'- -GACa----GCUaGACCGGCa---GCCACUaGCG- -5'
18996 3' -54.8 NC_004684.1 + 50069 0.68 0.729301
Target:  5'- -gGUCGAgCUGcGCC-UUGGUG-UCGCa -3'
miRNA:   3'- gaCAGCUaGAC-CGGcAGCCACuAGCG- -5'
18996 3' -54.8 NC_004684.1 + 43627 0.67 0.739609
Target:  5'- ---aCGGUgUGGCCGagcgCGGUGAguUCGUc -3'
miRNA:   3'- gacaGCUAgACCGGCa---GCCACU--AGCG- -5'
18996 3' -54.8 NC_004684.1 + 42045 0.66 0.835233
Target:  5'- uUG-CGGUCcuccaGGCCGUUGGUGc-CGCc -3'
miRNA:   3'- gACaGCUAGa----CCGGCAGCCACuaGCG- -5'
18996 3' -54.8 NC_004684.1 + 60438 0.75 0.341106
Target:  5'- cCUGgcaccgCUGGCCGaacgcgCGGUGAUCGCg -3'
miRNA:   3'- -GACagcua-GACCGGCa-----GCCACUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.