miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18996 3' -54.8 NC_004684.1 + 12005 0.72 0.486469
Target:  5'- ---aCGGccCUGGCUGUCGGUGGUgcCGCg -3'
miRNA:   3'- gacaGCUa-GACCGGCAGCCACUA--GCG- -5'
18996 3' -54.8 NC_004684.1 + 60438 0.75 0.341106
Target:  5'- cCUGgcaccgCUGGCCGaacgcgCGGUGAUCGCg -3'
miRNA:   3'- -GACagcua-GACCGGCa-----GCCACUAGCG- -5'
18996 3' -54.8 NC_004684.1 + 13996 1.11 0.001267
Target:  5'- gCUGUCGAUCUGGCCGUCGGUGAUCGCc -3'
miRNA:   3'- -GACAGCUAGACCGGCAGCCACUAGCG- -5'
18996 3' -54.8 NC_004684.1 + 476 0.67 0.779694
Target:  5'- -cGUaCGcgg-GGCCGUCGGUcucggccaGGUCGCg -3'
miRNA:   3'- gaCA-GCuagaCCGGCAGCCA--------CUAGCG- -5'
18996 3' -54.8 NC_004684.1 + 38410 0.67 0.769866
Target:  5'- uUGUCcuuGAgcuUGGCC-UCGGUGAUCGa -3'
miRNA:   3'- gACAG---CUag-ACCGGcAGCCACUAGCg -5'
18996 3' -54.8 NC_004684.1 + 54041 0.67 0.769866
Target:  5'- aCUGUgCGGUgcucagcugugcCUGGCCGacaCGGUGAcccCGCa -3'
miRNA:   3'- -GACA-GCUA------------GACCGGCa--GCCACUa--GCG- -5'
18996 3' -54.8 NC_004684.1 + 42045 0.66 0.835233
Target:  5'- uUG-CGGUCcuccaGGCCGUUGGUGc-CGCc -3'
miRNA:   3'- gACaGCUAGa----CCGGCAGCCACuaGCG- -5'
18996 3' -54.8 NC_004684.1 + 59574 0.66 0.826434
Target:  5'- -cGUUGGggccgCUGGCCGcgcaggUGGUGGacaUCGCc -3'
miRNA:   3'- gaCAGCUa----GACCGGCa-----GCCACU---AGCG- -5'
18996 3' -54.8 NC_004684.1 + 20450 0.66 0.817439
Target:  5'- -cGUCGGggUGGCCugcgCGGUGAcggUGCa -3'
miRNA:   3'- gaCAGCUagACCGGca--GCCACUa--GCG- -5'
18996 3' -54.8 NC_004684.1 + 2825 0.67 0.769866
Target:  5'- -cGcCGAacgUgUGGCCGUgCGGUGuggCGCa -3'
miRNA:   3'- gaCaGCU---AgACCGGCA-GCCACua-GCG- -5'
18996 3' -54.8 NC_004684.1 + 32813 0.68 0.687248
Target:  5'- -gGUCGAUgUaGGCCGUgCGGUacGUCGUg -3'
miRNA:   3'- gaCAGCUAgA-CCGGCA-GCCAc-UAGCG- -5'
18996 3' -54.8 NC_004684.1 + 12081 0.66 0.826434
Target:  5'- cCUGcggGGUCauGCCGUCGGUGccgccgGUCGCg -3'
miRNA:   3'- -GACag-CUAGacCGGCAGCCAC------UAGCG- -5'
18996 3' -54.8 NC_004684.1 + 61021 0.68 0.687248
Target:  5'- aUGUCGAaCUGGCCGagGcGUGcgaCGCc -3'
miRNA:   3'- gACAGCUaGACCGGCagC-CACua-GCG- -5'
18996 3' -54.8 NC_004684.1 + 7125 0.66 0.808258
Target:  5'- -cGUCGGaCUGGuuGUUGuccuUGAUCGUg -3'
miRNA:   3'- gaCAGCUaGACCggCAGCc---ACUAGCG- -5'
18996 3' -54.8 NC_004684.1 + 31260 0.66 0.829977
Target:  5'- uUGccCGAUCUGGCCcagcaccgccgccggGUUGGUGAgcagguugUGCg -3'
miRNA:   3'- gACa-GCUAGACCGG---------------CAGCCACUa-------GCG- -5'
18996 3' -54.8 NC_004684.1 + 3931 0.67 0.749813
Target:  5'- --uUCGGUgUGGUCGUCGGUcggcacgccGAaCGCg -3'
miRNA:   3'- gacAGCUAgACCGGCAGCCA---------CUaGCG- -5'
18996 3' -54.8 NC_004684.1 + 41445 0.72 0.456872
Target:  5'- -gGUCGAUgaaccggguggcCUuggcccGGCCGUCGGcGGUCGCg -3'
miRNA:   3'- gaCAGCUA------------GA------CCGGCAGCCaCUAGCG- -5'
18996 3' -54.8 NC_004684.1 + 11620 0.66 0.817439
Target:  5'- ---cCGAgCUGGCCGUCGGccgccUGAcCGUc -3'
miRNA:   3'- gacaGCUaGACCGGCAGCC-----ACUaGCG- -5'
18996 3' -54.8 NC_004684.1 + 14474 0.66 0.817439
Target:  5'- -gGUCGAUCgaggUGGuuGcCGGUaccacgccGGUCGCc -3'
miRNA:   3'- gaCAGCUAG----ACCggCaGCCA--------CUAGCG- -5'
18996 3' -54.8 NC_004684.1 + 11132 0.66 0.809184
Target:  5'- cCUGUUGAUCcacaagguggucgcGCCGUCGGUGGaccUgGCc -3'
miRNA:   3'- -GACAGCUAGac------------CGGCAGCCACU---AgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.