miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 5' -56.3 NC_004684.1 + 14383 0.69 0.474477
Target:  5'- -gCGCUGGUGGCGCUGgacGACGguUAc -3'
miRNA:   3'- aaGCGGCUACCGUGGCaa-CUGCguGU- -5'
18997 5' -56.3 NC_004684.1 + 14506 0.73 0.284826
Target:  5'- gUCGCCGGUGGCACgG-UGACGg--- -3'
miRNA:   3'- aAGCGGCUACCGUGgCaACUGCgugu -5'
18997 5' -56.3 NC_004684.1 + 15780 0.66 0.655166
Target:  5'- -aUGCCGGUGGCgucggugccGCCGcUGGC-CACGa -3'
miRNA:   3'- aaGCGGCUACCG---------UGGCaACUGcGUGU- -5'
18997 5' -56.3 NC_004684.1 + 15815 0.66 0.698404
Target:  5'- -aCGCCGA--GCGacCCGgUGGCGCGCGg -3'
miRNA:   3'- aaGCGGCUacCGU--GGCaACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 16861 0.69 0.494719
Target:  5'- uUUUGCUGGUGGCcagugucugcGCCGgUGugGUGCAg -3'
miRNA:   3'- -AAGCGGCUACCG----------UGGCaACugCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 18430 0.69 0.504987
Target:  5'- -cCGCCGGUcGGCuCCGggGGCgGCACc -3'
miRNA:   3'- aaGCGGCUA-CCGuGGCaaCUG-CGUGu -5'
18997 5' -56.3 NC_004684.1 + 19016 0.67 0.62248
Target:  5'- gUCGCUGGucuccggguUGGCACCGgcGGcCGgGCAg -3'
miRNA:   3'- aAGCGGCU---------ACCGUGGCaaCU-GCgUGU- -5'
18997 5' -56.3 NC_004684.1 + 19649 0.66 0.676868
Target:  5'- -aCGCCaGGcccggagaccUGGCACCGcccGGCGCACc -3'
miRNA:   3'- aaGCGG-CU----------ACCGUGGCaa-CUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 19860 0.7 0.444917
Target:  5'- gUCGCCcccgGcgGGCACCGgcagGcCGCGCAg -3'
miRNA:   3'- aAGCGG----CuaCCGUGGCaa--CuGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 20149 0.73 0.319769
Target:  5'- cUUCGCCGGUGacggcccggcccuuGCGgCGUUcGACGCGCAc -3'
miRNA:   3'- -AAGCGGCUAC--------------CGUgGCAA-CUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 20345 0.67 0.644278
Target:  5'- gUCGcCCGGU-GCACCGUcacCGCGCAg -3'
miRNA:   3'- aAGC-GGCUAcCGUGGCAacuGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 20605 0.67 0.644278
Target:  5'- -aCGCCGAgcgucuaccugGGCACCGgcGAgCGC-CAg -3'
miRNA:   3'- aaGCGGCUa----------CCGUGGCaaCU-GCGuGU- -5'
18997 5' -56.3 NC_004684.1 + 22985 0.69 0.484547
Target:  5'- cUUGUCGcUGGCACCG---ACGCGCAg -3'
miRNA:   3'- aAGCGGCuACCGUGGCaacUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 23061 0.74 0.257521
Target:  5'- -gCGguUCGAUGGCGgCGUUGGCGCGCu -3'
miRNA:   3'- aaGC--GGCUACCGUgGCAACUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 23598 0.67 0.62248
Target:  5'- -cCGCCGGUGGUAUCacccGCGCGCu -3'
miRNA:   3'- aaGCGGCUACCGUGGcaacUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 24493 0.66 0.687662
Target:  5'- -cCGCCGggGGCgguGCCGcagGGcCGCGCGu -3'
miRNA:   3'- aaGCGGCuaCCG---UGGCaa-CU-GCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 24611 0.73 0.299315
Target:  5'- -cCGCCguaGAUGGCACCGccGAaCGCGCGg -3'
miRNA:   3'- aaGCGG---CUACCGUGGCaaCU-GCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 25021 0.68 0.557566
Target:  5'- -gCGCCGGUgcagcuggaggcGGCAUCGacGugGCGCAg -3'
miRNA:   3'- aaGCGGCUA------------CCGUGGCaaCugCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 25545 0.72 0.362912
Target:  5'- gUCGCUGAUGGCACCGga---GCAg- -3'
miRNA:   3'- aAGCGGCUACCGUGGCaacugCGUgu -5'
18997 5' -56.3 NC_004684.1 + 25858 0.68 0.589867
Target:  5'- -cCGCCGGUGGaGCCG--GACGC-CAg -3'
miRNA:   3'- aaGCGGCUACCgUGGCaaCUGCGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.