miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 5' -56.3 NC_004684.1 + 776 0.68 0.546906
Target:  5'- -cCGCCGA-GGCACCGUgaaUGAuggcccucaccUGCACc -3'
miRNA:   3'- aaGCGGCUaCCGUGGCA---ACU-----------GCGUGu -5'
18997 5' -56.3 NC_004684.1 + 2826 0.67 0.62248
Target:  5'- -aCGCCGAacgugUGGCcguGCgGUgUGGCGCACu -3'
miRNA:   3'- aaGCGGCU-----ACCG---UGgCA-ACUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 3484 0.68 0.568285
Target:  5'- -aCGCCGGgccGCACCGUggccgccagGACGcCGCAa -3'
miRNA:   3'- aaGCGGCUac-CGUGGCAa--------CUGC-GUGU- -5'
18997 5' -56.3 NC_004684.1 + 3654 0.76 0.209365
Target:  5'- -aUGCCGGUcGGCACCGaUG-CGCACAc -3'
miRNA:   3'- aaGCGGCUA-CCGUGGCaACuGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 5258 0.67 0.633379
Target:  5'- cUUCGgCGAUGGCGggaaUGUUGAUGUGCc -3'
miRNA:   3'- -AAGCgGCUACCGUg---GCAACUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 5681 0.72 0.329986
Target:  5'- -aCGCCGGUGGCAUCc-UGACGC-CGg -3'
miRNA:   3'- aaGCGGCUACCGUGGcaACUGCGuGU- -5'
18997 5' -56.3 NC_004684.1 + 7351 0.73 0.322106
Target:  5'- -cCGCCGGUGcGCGCCGUggaGaACGCAUc -3'
miRNA:   3'- aaGCGGCUAC-CGUGGCAa--C-UGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 8162 0.67 0.611588
Target:  5'- --gGUCGAUGGCGCUGgcaaUGAgcCGCACc -3'
miRNA:   3'- aagCGGCUACCGUGGCa---ACU--GCGUGu -5'
18997 5' -56.3 NC_004684.1 + 8173 0.66 0.655166
Target:  5'- aUCGCCGggGGCgcGCUGggccaGGCGCAg- -3'
miRNA:   3'- aAGCGGCuaCCG--UGGCaa---CUGCGUgu -5'
18997 5' -56.3 NC_004684.1 + 8449 0.66 0.666032
Target:  5'- gUCGCCGGUgGGCAgcucgaugaUUGUuuucuucucgcUGGCGCGCAc -3'
miRNA:   3'- aAGCGGCUA-CCGU---------GGCA-----------ACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 9805 0.75 0.214931
Target:  5'- -gCGCCGGUGGCACCc--GACGCuCAa -3'
miRNA:   3'- aaGCGGCUACCGUGGcaaCUGCGuGU- -5'
18997 5' -56.3 NC_004684.1 + 10183 0.69 0.524741
Target:  5'- gUCGCCGGUGuggcugaGCACCc--GGCGCACc -3'
miRNA:   3'- aAGCGGCUAC-------CGUGGcaaCUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 10418 0.67 0.644278
Target:  5'- --gGUCGAUGGCgGCCugcGUUGcgGCGCGCAc -3'
miRNA:   3'- aagCGGCUACCG-UGG---CAAC--UGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 11304 0.7 0.444917
Target:  5'- -aCGCUGGUGGcCACCGcugccuUUGGCGaCACGu -3'
miRNA:   3'- aaGCGGCUACC-GUGGC------AACUGC-GUGU- -5'
18997 5' -56.3 NC_004684.1 + 12407 0.74 0.273638
Target:  5'- -aCGCCGAgcgcagGGUuuugaucguaccuccACCGUUGGCGCGCu -3'
miRNA:   3'- aaGCGGCUa-----CCG---------------UGGCAACUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 12881 0.66 0.698404
Target:  5'- gUCGgCGggGGUGCCGUUGuccuCGUugGc -3'
miRNA:   3'- aAGCgGCuaCCGUGGCAACu---GCGugU- -5'
18997 5' -56.3 NC_004684.1 + 13274 0.68 0.546906
Target:  5'- -gCGCUGGUGGcCGCCGgUGGCugguGCGCGc -3'
miRNA:   3'- aaGCGGCUACC-GUGGCaACUG----CGUGU- -5'
18997 5' -56.3 NC_004684.1 + 13637 0.66 0.698404
Target:  5'- --aGCCGAUGGcCGCCa--GGCGCAg- -3'
miRNA:   3'- aagCGGCUACC-GUGGcaaCUGCGUgu -5'
18997 5' -56.3 NC_004684.1 + 13639 0.68 0.59095
Target:  5'- gUUCGCCGccGcGCACCugcguggugucucgUGGCGCACGg -3'
miRNA:   3'- -AAGCGGCuaC-CGUGGca------------ACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 14303 1.06 0.001394
Target:  5'- gUUCGCCGAUGGCACCGUUGACGCACAg -3'
miRNA:   3'- -AAGCGGCUACCGUGGCAACUGCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.