miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 5' -56.3 NC_004684.1 + 66882 0.68 0.568285
Target:  5'- -gCGCCGGUGGCgACCuucGGCGCGg- -3'
miRNA:   3'- aaGCGGCUACCG-UGGcaaCUGCGUgu -5'
18997 5' -56.3 NC_004684.1 + 66839 0.67 0.633379
Target:  5'- gUCGCCGG-GGUGCUGUaccgggUGGUGCGCAa -3'
miRNA:   3'- aAGCGGCUaCCGUGGCA------ACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 65764 0.69 0.474477
Target:  5'- gUUgGCCGccGcGCGCCGgugGGCGCGCGc -3'
miRNA:   3'- -AAgCGGCuaC-CGUGGCaa-CUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 65552 0.67 0.611588
Target:  5'- -cUGCCGGgccUGGUACCG---GCGCACGg -3'
miRNA:   3'- aaGCGGCU---ACCGUGGCaacUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 64422 0.66 0.687662
Target:  5'- -cCGCCGuccagGGCACCGaUGgucucgauguGCGCGCc -3'
miRNA:   3'- aaGCGGCua---CCGUGGCaAC----------UGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 64241 0.66 0.698404
Target:  5'- cUCgGCCa--GGCGCUggguGUUGGCGCACAc -3'
miRNA:   3'- aAG-CGGcuaCCGUGG----CAACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 63299 0.68 0.568285
Target:  5'- -cCGCCGGUGGCcgagaagaugggGCCGUUcGGC-CGCGu -3'
miRNA:   3'- aaGCGGCUACCG------------UGGCAA-CUGcGUGU- -5'
18997 5' -56.3 NC_004684.1 + 62613 0.71 0.389063
Target:  5'- -gCGCCGA-GGCgcuuGCUGgcGACGCGCAc -3'
miRNA:   3'- aaGCGGCUaCCG----UGGCaaCUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 61884 0.72 0.354471
Target:  5'- -cUGCCGAcGGgGCCGagcUGGCGCGCAu -3'
miRNA:   3'- aaGCGGCUaCCgUGGCa--ACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 61508 0.68 0.546906
Target:  5'- -gCGCuCGAUGcGCGCCagcagUGACGUGCAg -3'
miRNA:   3'- aaGCG-GCUAC-CGUGGca---ACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 59549 0.66 0.687662
Target:  5'- -cCGCCagcGcGCGCCGUUGuCGCACc -3'
miRNA:   3'- aaGCGGcuaC-CGUGGCAACuGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 58036 0.73 0.314367
Target:  5'- uUUCGCCGAUGaGCugCGUcUGGUGCGCc -3'
miRNA:   3'- -AAGCGGCUAC-CGugGCA-ACUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 57253 0.66 0.709083
Target:  5'- --gGCgGgcGGCACCGUcGGCccGCACAg -3'
miRNA:   3'- aagCGgCuaCCGUGGCAaCUG--CGUGU- -5'
18997 5' -56.3 NC_004684.1 + 57148 0.68 0.536311
Target:  5'- gUUCGCCuccAUGGCGgCGguggccGACGCGCAc -3'
miRNA:   3'- -AAGCGGc--UACCGUgGCaa----CUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 57097 0.67 0.633379
Target:  5'- -aCcCCGAUGGCGcgcucguccCCGgcggUGACGCGCu -3'
miRNA:   3'- aaGcGGCUACCGU---------GGCa---ACUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 56106 0.68 0.557566
Target:  5'- -gUGgCGGUGGCACgGUUguacGACGUACGg -3'
miRNA:   3'- aaGCgGCUACCGUGgCAA----CUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 55328 0.7 0.444917
Target:  5'- gUUCGCCGAcggcUGGCaggugaGCC--UGGCGCGCAu -3'
miRNA:   3'- -AAGCGGCU----ACCG------UGGcaACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 53350 0.66 0.666032
Target:  5'- --aGCCGAUGaCACCGga-GCGCGCc -3'
miRNA:   3'- aagCGGCUACcGUGGCaacUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 52756 0.68 0.589867
Target:  5'- gUgGCCGcUGGCGCaguCGUUGACGCc-- -3'
miRNA:   3'- aAgCGGCuACCGUG---GCAACUGCGugu -5'
18997 5' -56.3 NC_004684.1 + 51402 0.66 0.651901
Target:  5'- aUgGCCGGugaccgggaguuccUGGCACCGUucuucgaaaaUGACGC-CGa -3'
miRNA:   3'- aAgCGGCU--------------ACCGUGGCA----------ACUGCGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.