miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 5' -56.3 NC_004684.1 + 13274 0.68 0.546906
Target:  5'- -gCGCUGGUGGcCGCCGgUGGCugguGCGCGc -3'
miRNA:   3'- aaGCGGCUACC-GUGGCaACUG----CGUGU- -5'
18997 5' -56.3 NC_004684.1 + 55328 0.7 0.444917
Target:  5'- gUUCGCCGAcggcUGGCaggugaGCC--UGGCGCGCAu -3'
miRNA:   3'- -AAGCGGCU----ACCG------UGGcaACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 26439 0.7 0.454658
Target:  5'- -cCGCCGGUGGC-CCGguguacGGCgGCACGc -3'
miRNA:   3'- aaGCGGCUACCGuGGCaa----CUG-CGUGU- -5'
18997 5' -56.3 NC_004684.1 + 14383 0.69 0.474477
Target:  5'- -gCGCUGGUGGCGCUGgacGACGguUAc -3'
miRNA:   3'- aaGCGGCUACCGUGGCaa-CUGCguGU- -5'
18997 5' -56.3 NC_004684.1 + 65764 0.69 0.474477
Target:  5'- gUUgGCCGccGcGCGCCGgugGGCGCGCGc -3'
miRNA:   3'- -AAgCGGCuaC-CGUGGCaa-CUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 48251 0.69 0.481515
Target:  5'- cUUGCCGGggaGGCGuCCGUUGucgucggccaccauGCGCACGu -3'
miRNA:   3'- aAGCGGCUa--CCGU-GGCAAC--------------UGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 16861 0.69 0.494719
Target:  5'- uUUUGCUGGUGGCcagugucugcGCCGgUGugGUGCAg -3'
miRNA:   3'- -AAGCGGCUACCG----------UGGCaACugCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 37846 0.69 0.504987
Target:  5'- cUCGCUGAgcgugaUGGCcgcgcACCaUUGGCGCACGa -3'
miRNA:   3'- aAGCGGCU------ACCG-----UGGcAACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 57148 0.68 0.536311
Target:  5'- gUUCGCCuccAUGGCGgCGguggccGACGCGCAc -3'
miRNA:   3'- -AAGCGGc--UACCGUgGCaa----CUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 11304 0.7 0.444917
Target:  5'- -aCGCUGGUGGcCACCGcugccuUUGGCGaCACGu -3'
miRNA:   3'- aaGCGGCUACC-GUGGC------AACUGC-GUGU- -5'
18997 5' -56.3 NC_004684.1 + 62613 0.71 0.389063
Target:  5'- -gCGCCGA-GGCgcuuGCUGgcGACGCGCAc -3'
miRNA:   3'- aaGCGGCUaCCG----UGGCaaCUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 27346 0.72 0.329986
Target:  5'- aUCGCCGugGGCACCGgcaUGAUGCcCAa -3'
miRNA:   3'- aAGCGGCuaCCGUGGCa--ACUGCGuGU- -5'
18997 5' -56.3 NC_004684.1 + 3654 0.76 0.209365
Target:  5'- -aUGCCGGUcGGCACCGaUG-CGCACAc -3'
miRNA:   3'- aaGCGGCUA-CCGUGGCaACuGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 9805 0.75 0.214931
Target:  5'- -gCGCCGGUGGCACCc--GACGCuCAa -3'
miRNA:   3'- aaGCGGCUACCGUGGcaaCUGCGuGU- -5'
18997 5' -56.3 NC_004684.1 + 14506 0.73 0.284826
Target:  5'- gUCGCCGGUGGCACgG-UGACGg--- -3'
miRNA:   3'- aAGCGGCUACCGUGgCaACUGCgugu -5'
18997 5' -56.3 NC_004684.1 + 40491 0.73 0.284826
Target:  5'- -gCGCCGAgugcgccaGCACCugGUUGACGCGCAc -3'
miRNA:   3'- aaGCGGCUac------CGUGG--CAACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 58036 0.73 0.314367
Target:  5'- uUUCGCCGAUGaGCugCGUcUGGUGCGCc -3'
miRNA:   3'- -AAGCGGCUAC-CGugGCA-ACUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 20149 0.73 0.319769
Target:  5'- cUUCGCCGGUGacggcccggcccuuGCGgCGUUcGACGCGCAc -3'
miRNA:   3'- -AAGCGGCUAC--------------CGUgGCAA-CUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 7351 0.73 0.322106
Target:  5'- -cCGCCGGUGcGCGCCGUggaGaACGCAUc -3'
miRNA:   3'- aaGCGGCUAC-CGUGGCAa--C-UGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 5681 0.72 0.329986
Target:  5'- -aCGCCGGUGGCAUCc-UGACGC-CGg -3'
miRNA:   3'- aaGCGGCUACCGUGGcaACUGCGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.