miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 5' -56.3 NC_004684.1 + 14303 1.06 0.001394
Target:  5'- gUUCGCCGAUGGCACCGUUGACGCACAg -3'
miRNA:   3'- -AAGCGGCUACCGUGGCAACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 65552 0.67 0.611588
Target:  5'- -cUGCCGGgccUGGUACCG---GCGCACGg -3'
miRNA:   3'- aaGCGGCU---ACCGUGGCaacUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 66839 0.67 0.633379
Target:  5'- gUCGCCGG-GGUGCUGUaccgggUGGUGCGCAa -3'
miRNA:   3'- aAGCGGCUaCCGUGGCA------ACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 12881 0.66 0.698404
Target:  5'- gUCGgCGggGGUGCCGUUGuccuCGUugGc -3'
miRNA:   3'- aAGCgGCuaCCGUGGCAACu---GCGugU- -5'
18997 5' -56.3 NC_004684.1 + 26488 0.73 0.322106
Target:  5'- -gCGCCGGUGGCGgCGUUGGC-CAg- -3'
miRNA:   3'- aaGCGGCUACCGUgGCAACUGcGUgu -5'
18997 5' -56.3 NC_004684.1 + 61884 0.72 0.354471
Target:  5'- -cUGCCGAcGGgGCCGagcUGGCGCGCAu -3'
miRNA:   3'- aaGCGGCUaCCgUGGCa--ACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 38971 0.7 0.435295
Target:  5'- gUCGCUGuccagcGUGGCGgCGUUGAacCGCGCGu -3'
miRNA:   3'- aAGCGGC------UACCGUgGCAACU--GCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 19860 0.7 0.444917
Target:  5'- gUCGCCcccgGcgGGCACCGgcagGcCGCGCAg -3'
miRNA:   3'- aAGCGG----CuaCCGUGGCaa--CuGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 26682 0.69 0.504987
Target:  5'- -cCGCCGGUGGCgaACCc---GCGCACAc -3'
miRNA:   3'- aaGCGGCUACCG--UGGcaacUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 8162 0.67 0.611588
Target:  5'- --gGUCGAUGGCGCUGgcaaUGAgcCGCACc -3'
miRNA:   3'- aagCGGCUACCGUGGCa---ACU--GCGUGu -5'
18997 5' -56.3 NC_004684.1 + 30051 0.68 0.561847
Target:  5'- -cCGCCacgguGGUGGCACCGgaggUGACcgacaccuucacgcuGCGCAg -3'
miRNA:   3'- aaGCGG-----CUACCGUGGCa---ACUG---------------CGUGU- -5'
18997 5' -56.3 NC_004684.1 + 18430 0.69 0.504987
Target:  5'- -cCGCCGGUcGGCuCCGggGGCgGCACc -3'
miRNA:   3'- aaGCGGCUA-CCGuGGCaaCUG-CGUGu -5'
18997 5' -56.3 NC_004684.1 + 23061 0.74 0.257521
Target:  5'- -gCGguUCGAUGGCGgCGUUGGCGCGCu -3'
miRNA:   3'- aaGC--GGCUACCGUgGCAACUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 63299 0.68 0.568285
Target:  5'- -cCGCCGGUGGCcgagaagaugggGCCGUUcGGC-CGCGu -3'
miRNA:   3'- aaGCGGCUACCG------------UGGCAA-CUGcGUGU- -5'
18997 5' -56.3 NC_004684.1 + 12407 0.74 0.273638
Target:  5'- -aCGCCGAgcgcagGGUuuugaucguaccuccACCGUUGGCGCGCu -3'
miRNA:   3'- aaGCGGCUa-----CCG---------------UGGCAACUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 22985 0.69 0.484547
Target:  5'- cUUGUCGcUGGCACCG---ACGCGCAg -3'
miRNA:   3'- aAGCGGCuACCGUGGCaacUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 25858 0.68 0.589867
Target:  5'- -cCGCCGGUGGaGCCG--GACGC-CAg -3'
miRNA:   3'- aaGCGGCUACCgUGGCaaCUGCGuGU- -5'
18997 5' -56.3 NC_004684.1 + 2826 0.67 0.62248
Target:  5'- -aCGCCGAacgugUGGCcguGCgGUgUGGCGCACu -3'
miRNA:   3'- aaGCGGCU-----ACCG---UGgCA-ACUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 24611 0.73 0.299315
Target:  5'- -cCGCCguaGAUGGCACCGccGAaCGCGCGg -3'
miRNA:   3'- aaGCGG---CUACCGUGGCaaCU-GCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 25545 0.72 0.362912
Target:  5'- gUCGCUGAUGGCACCGga---GCAg- -3'
miRNA:   3'- aAGCGGCUACCGUGGCaacugCGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.