miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 5' -56.3 NC_004684.1 + 3484 0.68 0.568285
Target:  5'- -aCGCCGGgccGCACCGUggccgccagGACGcCGCAa -3'
miRNA:   3'- aaGCGGCUac-CGUGGCAa--------CUGC-GUGU- -5'
18997 5' -56.3 NC_004684.1 + 63299 0.68 0.568285
Target:  5'- -cCGCCGGUGGCcgagaagaugggGCCGUUcGGC-CGCGu -3'
miRNA:   3'- aaGCGGCUACCG------------UGGCAA-CUGcGUGU- -5'
18997 5' -56.3 NC_004684.1 + 30051 0.68 0.561847
Target:  5'- -cCGCCacgguGGUGGCACCGgaggUGACcgacaccuucacgcuGCGCAg -3'
miRNA:   3'- aaGCGG-----CUACCGUGGCa---ACUG---------------CGUGU- -5'
18997 5' -56.3 NC_004684.1 + 25021 0.68 0.557566
Target:  5'- -gCGCCGGUgcagcuggaggcGGCAUCGacGugGCGCAg -3'
miRNA:   3'- aaGCGGCUA------------CCGUGGCaaCugCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 56106 0.68 0.557566
Target:  5'- -gUGgCGGUGGCACgGUUguacGACGUACGg -3'
miRNA:   3'- aaGCgGCUACCGUGgCAA----CUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 44075 0.68 0.557566
Target:  5'- cUCGCCGGUGGU------GACGCACAu -3'
miRNA:   3'- aAGCGGCUACCGuggcaaCUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 27941 0.68 0.546906
Target:  5'- -cCGCCGGagcUGGCACCGUgguACGuCGCc -3'
miRNA:   3'- aaGCGGCU---ACCGUGGCAac-UGC-GUGu -5'
18997 5' -56.3 NC_004684.1 + 776 0.68 0.546906
Target:  5'- -cCGCCGA-GGCACCGUgaaUGAuggcccucaccUGCACc -3'
miRNA:   3'- aaGCGGCUaCCGUGGCA---ACU-----------GCGUGu -5'
18997 5' -56.3 NC_004684.1 + 13274 0.68 0.546906
Target:  5'- -gCGCUGGUGGcCGCCGgUGGCugguGCGCGc -3'
miRNA:   3'- aaGCGGCUACC-GUGGCaACUG----CGUGU- -5'
18997 5' -56.3 NC_004684.1 + 61508 0.68 0.546906
Target:  5'- -gCGCuCGAUGcGCGCCagcagUGACGUGCAg -3'
miRNA:   3'- aaGCG-GCUAC-CGUGGca---ACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 57148 0.68 0.536311
Target:  5'- gUUCGCCuccAUGGCGgCGguggccGACGCGCAc -3'
miRNA:   3'- -AAGCGGc--UACCGUgGCaa----CUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 10183 0.69 0.524741
Target:  5'- gUCGCCGGUGuggcugaGCACCc--GGCGCACc -3'
miRNA:   3'- aAGCGGCUAC-------CGUGGcaaCUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 18430 0.69 0.504987
Target:  5'- -cCGCCGGUcGGCuCCGggGGCgGCACc -3'
miRNA:   3'- aaGCGGCUA-CCGuGGCaaCUG-CGUGu -5'
18997 5' -56.3 NC_004684.1 + 37846 0.69 0.504987
Target:  5'- cUCGCUGAgcgugaUGGCcgcgcACCaUUGGCGCACGa -3'
miRNA:   3'- aAGCGGCU------ACCG-----UGGcAACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 26682 0.69 0.504987
Target:  5'- -cCGCCGGUGGCgaACCc---GCGCACAc -3'
miRNA:   3'- aaGCGGCUACCG--UGGcaacUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 16861 0.69 0.494719
Target:  5'- uUUUGCUGGUGGCcagugucugcGCCGgUGugGUGCAg -3'
miRNA:   3'- -AAGCGGCUACCG----------UGGCaACugCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 22985 0.69 0.484547
Target:  5'- cUUGUCGcUGGCACCG---ACGCGCAg -3'
miRNA:   3'- aAGCGGCuACCGUGGCaacUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 48251 0.69 0.481515
Target:  5'- cUUGCCGGggaGGCGuCCGUUGucgucggccaccauGCGCACGu -3'
miRNA:   3'- aAGCGGCUa--CCGU-GGCAAC--------------UGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 65764 0.69 0.474477
Target:  5'- gUUgGCCGccGcGCGCCGgugGGCGCGCGc -3'
miRNA:   3'- -AAgCGGCuaC-CGUGGCaa-CUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 14383 0.69 0.474477
Target:  5'- -gCGCUGGUGGCGCUGgacGACGguUAc -3'
miRNA:   3'- aaGCGGCUACCGUGGCaa-CUGCguGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.