miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18997 5' -56.3 NC_004684.1 + 51402 0.66 0.651901
Target:  5'- aUgGCCGGugaccgggaguuccUGGCACCGUucuucgaaaaUGACGC-CGa -3'
miRNA:   3'- aAgCGGCU--------------ACCGUGGCA----------ACUGCGuGU- -5'
18997 5' -56.3 NC_004684.1 + 20605 0.67 0.644278
Target:  5'- -aCGCCGAgcgucuaccugGGCACCGgcGAgCGC-CAg -3'
miRNA:   3'- aaGCGGCUa----------CCGUGGCaaCU-GCGuGU- -5'
18997 5' -56.3 NC_004684.1 + 20345 0.67 0.644278
Target:  5'- gUCGcCCGGU-GCACCGUcacCGCGCAg -3'
miRNA:   3'- aAGC-GGCUAcCGUGGCAacuGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 32402 0.67 0.644278
Target:  5'- gUCGuuGGUGuGCACCGgcGucAgGCACAg -3'
miRNA:   3'- aAGCggCUAC-CGUGGCaaC--UgCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 31722 0.67 0.644278
Target:  5'- aUCGCCGGUGGCgacacaccGCCGccGACGg--- -3'
miRNA:   3'- aAGCGGCUACCG--------UGGCaaCUGCgugu -5'
18997 5' -56.3 NC_004684.1 + 10418 0.67 0.644278
Target:  5'- --gGUCGAUGGCgGCCugcGUUGcgGCGCGCAc -3'
miRNA:   3'- aagCGGCUACCG-UGG---CAAC--UGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 57097 0.67 0.633379
Target:  5'- -aCcCCGAUGGCGcgcucguccCCGgcggUGACGCGCu -3'
miRNA:   3'- aaGcGGCUACCGU---------GGCa---ACUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 66839 0.67 0.633379
Target:  5'- gUCGCCGG-GGUGCUGUaccgggUGGUGCGCAa -3'
miRNA:   3'- aAGCGGCUaCCGUGGCA------ACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 5258 0.67 0.633379
Target:  5'- cUUCGgCGAUGGCGggaaUGUUGAUGUGCc -3'
miRNA:   3'- -AAGCgGCUACCGUg---GCAACUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 23598 0.67 0.62248
Target:  5'- -cCGCCGGUGGUAUCacccGCGCGCu -3'
miRNA:   3'- aaGCGGCUACCGUGGcaacUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 19016 0.67 0.62248
Target:  5'- gUCGCUGGucuccggguUGGCACCGgcGGcCGgGCAg -3'
miRNA:   3'- aAGCGGCU---------ACCGUGGCaaCU-GCgUGU- -5'
18997 5' -56.3 NC_004684.1 + 2826 0.67 0.62248
Target:  5'- -aCGCCGAacgugUGGCcguGCgGUgUGGCGCACu -3'
miRNA:   3'- aaGCGGCU-----ACCG---UGgCA-ACUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 65552 0.67 0.611588
Target:  5'- -cUGCCGGgccUGGUACCG---GCGCACGg -3'
miRNA:   3'- aaGCGGCU---ACCGUGGCaacUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 8162 0.67 0.611588
Target:  5'- --gGUCGAUGGCGCUGgcaaUGAgcCGCACc -3'
miRNA:   3'- aagCGGCUACCGUGGCa---ACU--GCGUGu -5'
18997 5' -56.3 NC_004684.1 + 45435 0.67 0.600714
Target:  5'- gUCGCCGccgcucAUGGCgucauccaccagGCCGcaGACGCACu -3'
miRNA:   3'- aAGCGGC------UACCG------------UGGCaaCUGCGUGu -5'
18997 5' -56.3 NC_004684.1 + 13639 0.68 0.59095
Target:  5'- gUUCGCCGccGcGCACCugcguggugucucgUGGCGCACGg -3'
miRNA:   3'- -AAGCGGCuaC-CGUGGca------------ACUGCGUGU- -5'
18997 5' -56.3 NC_004684.1 + 25858 0.68 0.589867
Target:  5'- -cCGCCGGUGGaGCCG--GACGC-CAg -3'
miRNA:   3'- aaGCGGCUACCgUGGCaaCUGCGuGU- -5'
18997 5' -56.3 NC_004684.1 + 52756 0.68 0.589867
Target:  5'- gUgGCCGcUGGCGCaguCGUUGACGCc-- -3'
miRNA:   3'- aAgCGGCuACCGUG---GCAACUGCGugu -5'
18997 5' -56.3 NC_004684.1 + 30962 0.68 0.579054
Target:  5'- cUCGCUguggaacggcguGGUcGGCACCGUUgaGACGCugAu -3'
miRNA:   3'- aAGCGG------------CUA-CCGUGGCAA--CUGCGugU- -5'
18997 5' -56.3 NC_004684.1 + 66882 0.68 0.568285
Target:  5'- -gCGCCGGUGGCgACCuucGGCGCGg- -3'
miRNA:   3'- aaGCGGCUACCG-UGGcaaCUGCGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.