miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18998 3' -61.1 NC_004684.1 + 12944 0.67 0.415735
Target:  5'- cGCCGUCGgcacccCCGGUGCUcccgccgACCGGCgGCa -3'
miRNA:   3'- uUGGCAGCa-----GGUCGCGG-------UGGUCG-CGc -5'
18998 3' -61.1 NC_004684.1 + 66413 0.67 0.40771
Target:  5'- cACCGggaCGUUCgAGCGCUACUAcGCGCc -3'
miRNA:   3'- uUGGCa--GCAGG-UCGCGGUGGU-CGCGc -5'
18998 3' -61.1 NC_004684.1 + 31204 0.67 0.40771
Target:  5'- cGCCaagGUCcUCCAGCGCCugCgcGGCGUc -3'
miRNA:   3'- uUGG---CAGcAGGUCGCGGugG--UCGCGc -5'
18998 3' -61.1 NC_004684.1 + 63497 0.67 0.40771
Target:  5'- cAGCUG-CG-CCuGCGCCAgCAGgGCGg -3'
miRNA:   3'- -UUGGCaGCaGGuCGCGGUgGUCgCGC- -5'
18998 3' -61.1 NC_004684.1 + 57486 0.67 0.40771
Target:  5'- cACCGUCGaCaAGCGCCGCacgcaGGUGCc -3'
miRNA:   3'- uUGGCAGCaGgUCGCGGUGg----UCGCGc -5'
18998 3' -61.1 NC_004684.1 + 14207 0.67 0.40771
Target:  5'- cGCUGUgCGUCaaCGGUGCCAUCGGCGa- -3'
miRNA:   3'- uUGGCA-GCAG--GUCGCGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 10193 0.67 0.40771
Target:  5'- aGACCGc---CCAGCGCCAgCgAGCGCu -3'
miRNA:   3'- -UUGGCagcaGGUCGCGGU-GgUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 18480 0.67 0.40771
Target:  5'- uGCUGUCGgugUCCGGCaCCGCCAcCGCu -3'
miRNA:   3'- uUGGCAGC---AGGUCGcGGUGGUcGCGc -5'
18998 3' -61.1 NC_004684.1 + 21598 0.67 0.405057
Target:  5'- --gUGUCGauggCCGGUGCCuuguccucugcuugACCGGCGCGu -3'
miRNA:   3'- uugGCAGCa---GGUCGCGG--------------UGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 33178 0.67 0.402415
Target:  5'- --gCGUCGg-CAGCGCCACgccggacagauugagCAGCGCa -3'
miRNA:   3'- uugGCAGCagGUCGCGGUG---------------GUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 13248 0.67 0.398908
Target:  5'- -uCCGUgG-CCAggccGUGaCCGCCAGCGCGc -3'
miRNA:   3'- uuGGCAgCaGGU----CGC-GGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 65518 0.67 0.398908
Target:  5'- cGCCGcaCG-CCAGCGCagCGCCuGGCGCGc -3'
miRNA:   3'- uUGGCa-GCaGGUCGCG--GUGG-UCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 66808 0.67 0.398908
Target:  5'- aGACCGUCa-CCGaguuCGCCGCgCAGCGCa -3'
miRNA:   3'- -UUGGCAGcaGGUc---GCGGUG-GUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 31748 0.67 0.390229
Target:  5'- cACCGcCGacagugCCAGCGUC-CCGGCGgGg -3'
miRNA:   3'- uUGGCaGCa-----GGUCGCGGuGGUCGCgC- -5'
18998 3' -61.1 NC_004684.1 + 61766 0.67 0.390229
Target:  5'- gAACCaggCGUCCAGCuCCagcACCAuGCGCGc -3'
miRNA:   3'- -UUGGca-GCAGGUCGcGG---UGGU-CGCGC- -5'
18998 3' -61.1 NC_004684.1 + 57388 0.67 0.390229
Target:  5'- uACCaGUCGcuaUCCAG-GCgGCCAGCGUa -3'
miRNA:   3'- uUGG-CAGC---AGGUCgCGgUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 26933 0.67 0.390229
Target:  5'- cGCUGgugcUCGaCCGGU-CCACCAGCGCGc -3'
miRNA:   3'- uUGGC----AGCaGGUCGcGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 29948 0.67 0.390229
Target:  5'- aAGgUGUCGgucaccUCCGGUGCCACCAcCGUGg -3'
miRNA:   3'- -UUgGCAGC------AGGUCGCGGUGGUcGCGC- -5'
18998 3' -61.1 NC_004684.1 + 39953 0.67 0.385081
Target:  5'- gAGCUGaugCGcgCCaAGCGCCuguacaucggacucaGCCAGCGCGg -3'
miRNA:   3'- -UUGGCa--GCa-GG-UCGCGG---------------UGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 45598 0.67 0.381674
Target:  5'- gAGCCGgacagGUCCAGC---ACCAGCGCGu -3'
miRNA:   3'- -UUGGCag---CAGGUCGcggUGGUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.