miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18998 3' -61.1 NC_004684.1 + 47616 0.66 0.444101
Target:  5'- cGCCGUCGguacUCGGCgucgGCCuugucguggacgGCCAGUGCGg -3'
miRNA:   3'- uUGGCAGCa---GGUCG----CGG------------UGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 26987 0.66 0.444101
Target:  5'- aGGCCGgUG-CgAGCGCgGCgGGCGCGg -3'
miRNA:   3'- -UUGGCaGCaGgUCGCGgUGgUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 55961 0.66 0.444101
Target:  5'- cGCCG-CGcUCCAGCggGUCAUCGGCGUc -3'
miRNA:   3'- uUGGCaGC-AGGUCG--CGGUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 15873 0.66 0.444101
Target:  5'- uGCaCGUUG-CCGGUGUCGCCGcCGCGa -3'
miRNA:   3'- uUG-GCAGCaGGUCGCGGUGGUcGCGC- -5'
18998 3' -61.1 NC_004684.1 + 58861 0.66 0.444101
Target:  5'- cACC-UCGUCCGGC-CCGCaCAGcCGCc -3'
miRNA:   3'- uUGGcAGCAGGUCGcGGUG-GUC-GCGc -5'
18998 3' -61.1 NC_004684.1 + 54256 0.66 0.436676
Target:  5'- cGCCGggacagcuccucagCCAGCGCCGCCAcccggccggggguGCGCGc -3'
miRNA:   3'- uUGGCagca----------GGUCGCGGUGGU-------------CGCGC- -5'
18998 3' -61.1 NC_004684.1 + 38260 0.66 0.434831
Target:  5'- uAACUGcucgcgguguuaUCGUCCGGCGaCCAUgcGCGCGa -3'
miRNA:   3'- -UUGGC------------AGCAGGUCGC-GGUGguCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 12880 0.66 0.425674
Target:  5'- aGGCCGcCG-CCGGggagccugcgcuCGCCGCCAGCGg- -3'
miRNA:   3'- -UUGGCaGCaGGUC------------GCGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 46830 0.66 0.425674
Target:  5'- cACUGUCGgcaaCCGGCGCucagCugCGGCGUa -3'
miRNA:   3'- uUGGCAGCa---GGUCGCG----GugGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 52749 0.66 0.425674
Target:  5'- ---gGUCGUCguG-GCCGCUGGCGCa -3'
miRNA:   3'- uuggCAGCAGguCgCGGUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 36744 0.66 0.425674
Target:  5'- cGCCGUC--CCGGCgcugacGCCGCCAGgGCc -3'
miRNA:   3'- uUGGCAGcaGGUCG------CGGUGGUCgCGc -5'
18998 3' -61.1 NC_004684.1 + 23992 0.66 0.425674
Target:  5'- aAGCCGUCG-CCAG-GCCAgCAGUucGCc -3'
miRNA:   3'- -UUGGCAGCaGGUCgCGGUgGUCG--CGc -5'
18998 3' -61.1 NC_004684.1 + 6137 0.66 0.422949
Target:  5'- -cUCGUCGUCguugagcaguucgaCGGCgGCgGCCAGCGUGc -3'
miRNA:   3'- uuGGCAGCAG--------------GUCG-CGgUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 24182 0.67 0.416633
Target:  5'- uGCCGcCGcccaaaaugCCGGUGCCugCGGUGCc -3'
miRNA:   3'- uUGGCaGCa--------GGUCGCGGugGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 7446 0.67 0.416633
Target:  5'- gAugCGUUcUCCacGGCGCgCACCGGCGgGu -3'
miRNA:   3'- -UugGCAGcAGG--UCGCG-GUGGUCGCgC- -5'
18998 3' -61.1 NC_004684.1 + 47314 0.67 0.416633
Target:  5'- uGGCCGUCa-CC-GUGUCGCCGGUGUGg -3'
miRNA:   3'- -UUGGCAGcaGGuCGCGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 34072 0.67 0.416633
Target:  5'- cACCGgCGaCCcuGGCGCgGCgGGCGCGa -3'
miRNA:   3'- uUGGCaGCaGG--UCGCGgUGgUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 22306 0.67 0.416633
Target:  5'- uGCCGUCG-CgCAGggagGCCACCuGCGCc -3'
miRNA:   3'- uUGGCAGCaG-GUCg---CGGUGGuCGCGc -5'
18998 3' -61.1 NC_004684.1 + 56597 0.67 0.416633
Target:  5'- cACCGaCG-CCGGUGaCCACCcgggucGGCGCGu -3'
miRNA:   3'- uUGGCaGCaGGUCGC-GGUGG------UCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 12904 0.67 0.416633
Target:  5'- gAGCCGcCGUCCucgggcGCGUCGUCGGCGgGg -3'
miRNA:   3'- -UUGGCaGCAGGu-----CGCGGUGGUCGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.