miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18998 3' -61.1 NC_004684.1 + 8692 0.69 0.282224
Target:  5'- cACCGggcUUGUUCgAG-GCCACCGGCGCGu -3'
miRNA:   3'- uUGGC---AGCAGG-UCgCGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 9723 0.69 0.317856
Target:  5'- uGCCGggaauguucaUGUUCAGCGCCugCacGGCGCGc -3'
miRNA:   3'- uUGGCa---------GCAGGUCGCGGugG--UCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 9840 0.68 0.340812
Target:  5'- uGCCGUCGaUCAcCGCCGCCGGUGa- -3'
miRNA:   3'- uUGGCAGCaGGUcGCGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 9899 0.77 0.080706
Target:  5'- uGGCCuugagCGUCgGGUGCCACCGGCGCa -3'
miRNA:   3'- -UUGGca---GCAGgUCGCGGUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 9951 0.66 0.472556
Target:  5'- --gCGUCGggaUCCGGCGgcagcUCACCGGCgGCGg -3'
miRNA:   3'- uugGCAGC---AGGUCGC-----GGUGGUCG-CGC- -5'
18998 3' -61.1 NC_004684.1 + 10193 0.67 0.40771
Target:  5'- aGACCGc---CCAGCGCCAgCgAGCGCu -3'
miRNA:   3'- -UUGGCagcaGGUCGCGGU-GgUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 10383 0.73 0.170777
Target:  5'- cACCGcCGgguaCCAG-GCCGCCAGCGUGc -3'
miRNA:   3'- uUGGCaGCa---GGUCgCGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 11007 0.66 0.45348
Target:  5'- -cCCGUCG-CUGGUGgguucaCCgACCAGCGCGa -3'
miRNA:   3'- uuGGCAGCaGGUCGC------GG-UGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 11155 0.68 0.348725
Target:  5'- cGCCGUCGguggaCCuG-GCCGCCAGCGa- -3'
miRNA:   3'- uUGGCAGCa----GGuCgCGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 11641 0.66 0.45348
Target:  5'- uGACCGUCGgcaUCGGC-CaCGCCAGCacgGCGg -3'
miRNA:   3'- -UUGGCAGCa--GGUCGcG-GUGGUCG---CGC- -5'
18998 3' -61.1 NC_004684.1 + 11685 0.8 0.047723
Target:  5'- uGCCGUCGUCCAG-GCgCACCGGCGgGc -3'
miRNA:   3'- uUGGCAGCAGGUCgCG-GUGGUCGCgC- -5'
18998 3' -61.1 NC_004684.1 + 11827 0.68 0.325377
Target:  5'- cGCCGcUGUCCGGCG--ACUGGCGCGa -3'
miRNA:   3'- uUGGCaGCAGGUCGCggUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 12069 0.69 0.310468
Target:  5'- uGCCGUCG----GUGCCGCCGGuCGCGg -3'
miRNA:   3'- uUGGCAGCagguCGCGGUGGUC-GCGC- -5'
18998 3' -61.1 NC_004684.1 + 12870 0.71 0.22057
Target:  5'- uGCCGUUGUCCucguuggccgcaGGCGCaGCC-GCGCGg -3'
miRNA:   3'- uUGGCAGCAGG------------UCGCGgUGGuCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 12880 0.66 0.425674
Target:  5'- aGGCCGcCG-CCGGggagccugcgcuCGCCGCCAGCGg- -3'
miRNA:   3'- -UUGGCaGCaGGUC------------GCGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 12904 0.67 0.416633
Target:  5'- gAGCCGcCGUCCucgggcGCGUCGUCGGCGgGg -3'
miRNA:   3'- -UUGGCaGCAGGu-----CGCGGUGGUCGCgC- -5'
18998 3' -61.1 NC_004684.1 + 12944 0.67 0.415735
Target:  5'- cGCCGUCGgcacccCCGGUGCUcccgccgACCGGCgGCa -3'
miRNA:   3'- uUGGCAGCa-----GGUCGCGG-------UGGUCG-CGc -5'
18998 3' -61.1 NC_004684.1 + 13248 0.67 0.398908
Target:  5'- -uCCGUgG-CCAggccGUGaCCGCCAGCGCGc -3'
miRNA:   3'- uuGGCAgCaGGU----CGC-GGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 13378 0.7 0.27151
Target:  5'- -uCCGaCGgcgcgcaccagccaCCGGCgGCCACCAGCGCGc -3'
miRNA:   3'- uuGGCaGCa-------------GGUCG-CGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 13731 0.69 0.30321
Target:  5'- cGCUGUCGgUCGGUGCCACCaccucGGUGCu -3'
miRNA:   3'- uUGGCAGCaGGUCGCGGUGG-----UCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.