miRNA display CGI


Results 21 - 40 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18998 3' -61.1 NC_004684.1 + 2956 0.72 0.179858
Target:  5'- cAGCagGUCGUCCGGCGCgACCAGgaaccCGUGg -3'
miRNA:   3'- -UUGg-CAGCAGGUCGCGgUGGUC-----GCGC- -5'
18998 3' -61.1 NC_004684.1 + 2185 0.72 0.179858
Target:  5'- cGCCGUaGUgCuGCGCCACCAGuUGCGa -3'
miRNA:   3'- uUGGCAgCAgGuCGCGGUGGUC-GCGC- -5'
18998 3' -61.1 NC_004684.1 + 50022 0.72 0.184558
Target:  5'- cACCGUCGgcggCAGCGUgGCCGGUGCc -3'
miRNA:   3'- uUGGCAGCag--GUCGCGgUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 50372 0.72 0.184558
Target:  5'- cGCCGUCGggcCUGGCGCUgGCCAGCGaCGa -3'
miRNA:   3'- uUGGCAGCa--GGUCGCGG-UGGUCGC-GC- -5'
18998 3' -61.1 NC_004684.1 + 6067 0.72 0.189365
Target:  5'- aGGCCGggacuucgcUCGgCCGGuCGCuCACCGGCGCGg -3'
miRNA:   3'- -UUGGC---------AGCaGGUC-GCG-GUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 42634 0.72 0.189365
Target:  5'- cGCCGcCGgugCUGGUGCCGCCAGCGa- -3'
miRNA:   3'- uUGGCaGCa--GGUCGCGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 25766 0.72 0.194282
Target:  5'- cGGCCuggCGUCCGGCuCCACCGGCgGCa -3'
miRNA:   3'- -UUGGca-GCAGGUCGcGGUGGUCG-CGc -5'
18998 3' -61.1 NC_004684.1 + 6021 0.72 0.199311
Target:  5'- gGACCGccCGguggCCAGCGCgGCCAGC-CGg -3'
miRNA:   3'- -UUGGCa-GCa---GGUCGCGgUGGUCGcGC- -5'
18998 3' -61.1 NC_004684.1 + 59540 0.72 0.204452
Target:  5'- cGCCGcCGaCCGGCGCaCACCGGUGgGc -3'
miRNA:   3'- uUGGCaGCaGGUCGCG-GUGGUCGCgC- -5'
18998 3' -61.1 NC_004684.1 + 36868 0.71 0.215081
Target:  5'- cGCCGcCGaCCAGCGUcggCACCGGgCGCGg -3'
miRNA:   3'- uUGGCaGCaGGUCGCG---GUGGUC-GCGC- -5'
18998 3' -61.1 NC_004684.1 + 25445 0.71 0.215081
Target:  5'- uGGCCuGUCGgacugcUCCGGUGCCAUCAGCGa- -3'
miRNA:   3'- -UUGG-CAGC------AGGUCGCGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 40434 0.71 0.215081
Target:  5'- aGGCCGcCG-CCAGCGaCCugcCCAGCGCc -3'
miRNA:   3'- -UUGGCaGCaGGUCGC-GGu--GGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 66970 0.71 0.22057
Target:  5'- cGCCGaaggUCGccaCCGGCGCUgacgugcugGCCAGCGCGg -3'
miRNA:   3'- uUGGC----AGCa--GGUCGCGG---------UGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 12870 0.71 0.22057
Target:  5'- uGCCGUUGUCCucguuggccgcaGGCGCaGCC-GCGCGg -3'
miRNA:   3'- uUGGCAGCAGG------------UCGCGgUGGuCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 29004 0.71 0.226179
Target:  5'- cAACaCGUCGUCCGGUcgaucagcggcgGUCGCCacGGCGCGc -3'
miRNA:   3'- -UUG-GCAGCAGGUCG------------CGGUGG--UCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 58443 0.71 0.226179
Target:  5'- cAACCGgcgCGgcaacgCCAGCaggGCCACCGgGCGCGc -3'
miRNA:   3'- -UUGGCa--GCa-----GGUCG---CGGUGGU-CGCGC- -5'
18998 3' -61.1 NC_004684.1 + 44625 0.71 0.231908
Target:  5'- cGACCGgguUCGUCCGG-GCCACCAcgGCGg -3'
miRNA:   3'- -UUGGC---AGCAGGUCgCGGUGGUcgCGC- -5'
18998 3' -61.1 NC_004684.1 + 20022 0.71 0.231908
Target:  5'- aGGCCGUgGUgCCugaagacccCGCCAUCAGCGCGg -3'
miRNA:   3'- -UUGGCAgCA-GGuc-------GCGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 21318 0.71 0.237759
Target:  5'- aGGCgGUgGUCCGGCGCgACCGcCGCa -3'
miRNA:   3'- -UUGgCAgCAGGUCGCGgUGGUcGCGc -5'
18998 3' -61.1 NC_004684.1 + 46864 0.7 0.243733
Target:  5'- gGACgGUCGacgguUCCuGCGCCGCCuGCGUc -3'
miRNA:   3'- -UUGgCAGC-----AGGuCGCGGUGGuCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.