miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18998 3' -61.1 NC_004684.1 + 14475 1.05 0.000673
Target:  5'- uAACCGUCGUCCAGCGCCACCAGCGCGc -3'
miRNA:   3'- -UUGGCAGCAGGUCGCGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 18678 0.87 0.015042
Target:  5'- aAGCCaUCGUCCAGaGCCACCAGCGCGg -3'
miRNA:   3'- -UUGGcAGCAGGUCgCGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 1164 0.81 0.040359
Target:  5'- cACCGaucaCGUCCAGCGCCGCCAGCcaGCa -3'
miRNA:   3'- uUGGCa---GCAGGUCGCGGUGGUCG--CGc -5'
18998 3' -61.1 NC_004684.1 + 6877 0.81 0.043891
Target:  5'- uGGCCGUCGUCCAGUG-CACCGGCGa- -3'
miRNA:   3'- -UUGGCAGCAGGUCGCgGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 11685 0.8 0.047723
Target:  5'- uGCCGUCGUCCAG-GCgCACCGGCGgGc -3'
miRNA:   3'- uUGGCAGCAGGUCgCG-GUGGUCGCgC- -5'
18998 3' -61.1 NC_004684.1 + 18537 0.8 0.049622
Target:  5'- uGCCGUCGUCCuGCucgggagccacgucgGCCGCCGGUGCGc -3'
miRNA:   3'- uUGGCAGCAGGuCG---------------CGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 1275 0.79 0.061279
Target:  5'- uGCCGUaguaGUCCAGCGCCugCGGCuCGg -3'
miRNA:   3'- uUGGCAg---CAGGUCGCGGugGUCGcGC- -5'
18998 3' -61.1 NC_004684.1 + 9899 0.77 0.080706
Target:  5'- uGGCCuugagCGUCgGGUGCCACCGGCGCa -3'
miRNA:   3'- -UUGGca---GCAGgUCGCGGUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 62207 0.75 0.11454
Target:  5'- uGCCGUCcuggccaaCCAGCGCCACCucgacaucgggguAGCGCGg -3'
miRNA:   3'- uUGGCAGca------GGUCGCGGUGG-------------UCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 42084 0.74 0.127825
Target:  5'- aGGuuGUCG-CCAGCgGCCACC-GCGCGg -3'
miRNA:   3'- -UUggCAGCaGGUCG-CGGUGGuCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 60151 0.73 0.149847
Target:  5'- gGGCCGcCGggCCGcGCGCCACgAGUGCGa -3'
miRNA:   3'- -UUGGCaGCa-GGU-CGCGGUGgUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 17614 0.73 0.153837
Target:  5'- cGACCacGUCGUCCGGCGUggCACC-GCGCu -3'
miRNA:   3'- -UUGG--CAGCAGGUCGCG--GUGGuCGCGc -5'
18998 3' -61.1 NC_004684.1 + 56837 0.73 0.153837
Target:  5'- cACCGUgGUCUGGUGCCgguucccguGCUGGCGCGg -3'
miRNA:   3'- uUGGCAgCAGGUCGCGG---------UGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 25358 0.73 0.162108
Target:  5'- aGGCCcUUGgugcgcagcuucUCCAGCGCCuucACCAGCGCGg -3'
miRNA:   3'- -UUGGcAGC------------AGGUCGCGG---UGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 22788 0.73 0.166392
Target:  5'- uGGCCa-CGUCCuGCGCCGCCGGgGCc -3'
miRNA:   3'- -UUGGcaGCAGGuCGCGGUGGUCgCGc -5'
18998 3' -61.1 NC_004684.1 + 847 0.73 0.170777
Target:  5'- cGGCgGU-GUCCaggAGCGCCGCCAGgGCGu -3'
miRNA:   3'- -UUGgCAgCAGG---UCGCGGUGGUCgCGC- -5'
18998 3' -61.1 NC_004684.1 + 10383 0.73 0.170777
Target:  5'- cACCGcCGgguaCCAG-GCCGCCAGCGUGc -3'
miRNA:   3'- uUGGCaGCa---GGUCgCGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 47169 0.72 0.175265
Target:  5'- cACCGUagCGgcggCCAGgGCCGCCGcuGCGCGg -3'
miRNA:   3'- uUGGCA--GCa---GGUCgCGGUGGU--CGCGC- -5'
18998 3' -61.1 NC_004684.1 + 57214 0.72 0.175265
Target:  5'- cAGCCG-CG-CCAGUGCUGCCAGCGg- -3'
miRNA:   3'- -UUGGCaGCaGGUCGCGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 8044 0.72 0.179858
Target:  5'- uGGCgGUCcUCCAGCGCCAgCAGgGUGc -3'
miRNA:   3'- -UUGgCAGcAGGUCGCGGUgGUCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.