miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18998 3' -61.1 NC_004684.1 + 55961 0.66 0.444101
Target:  5'- cGCCG-CGcUCCAGCggGUCAUCGGCGUc -3'
miRNA:   3'- uUGGCaGC-AGGUCG--CGGUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 12880 0.66 0.425674
Target:  5'- aGGCCGcCG-CCGGggagccugcgcuCGCCGCCAGCGg- -3'
miRNA:   3'- -UUGGCaGCaGGUC------------GCGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 30792 0.66 0.444101
Target:  5'- cAUCGUUGgCguGC-CCACCGGCGUGa -3'
miRNA:   3'- uUGGCAGCaGguCGcGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 36744 0.66 0.425674
Target:  5'- cGCCGUC--CCGGCgcugacGCCGCCAGgGCc -3'
miRNA:   3'- uUGGCAGcaGGUCG------CGGUGGUCgCGc -5'
18998 3' -61.1 NC_004684.1 + 26987 0.66 0.444101
Target:  5'- aGGCCGgUG-CgAGCGCgGCgGGCGCGg -3'
miRNA:   3'- -UUGGCaGCaGgUCGCGgUGgUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 23992 0.66 0.425674
Target:  5'- aAGCCGUCG-CCAG-GCCAgCAGUucGCc -3'
miRNA:   3'- -UUGGCAGCaGGUCgCGGUgGUCG--CGc -5'
18998 3' -61.1 NC_004684.1 + 47616 0.66 0.444101
Target:  5'- cGCCGUCGguacUCGGCgucgGCCuugucguggacgGCCAGUGCGg -3'
miRNA:   3'- uUGGCAGCa---GGUCG----CGG------------UGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 26550 0.66 0.462966
Target:  5'- aGGCCGggguguacgCGuUCCGGCGCgCcCUGGCGCGc -3'
miRNA:   3'- -UUGGCa--------GC-AGGUCGCG-GuGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 58861 0.66 0.444101
Target:  5'- cACC-UCGUCCGGC-CCGCaCAGcCGCc -3'
miRNA:   3'- uUGGcAGCAGGUCGcGGUG-GUC-GCGc -5'
18998 3' -61.1 NC_004684.1 + 63038 0.66 0.472556
Target:  5'- cACCaUCGU-CGGCGCgCGCC-GCGCGc -3'
miRNA:   3'- uUGGcAGCAgGUCGCG-GUGGuCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 15873 0.66 0.444101
Target:  5'- uGCaCGUUG-CCGGUGUCGCCGcCGCGa -3'
miRNA:   3'- uUG-GCAGCaGGUCGCGGUGGUcGCGC- -5'
18998 3' -61.1 NC_004684.1 + 19271 0.66 0.444101
Target:  5'- uGCCGcCGgagCCGGaGCCACCuGGCGaCGg -3'
miRNA:   3'- uUGGCaGCa--GGUCgCGGUGG-UCGC-GC- -5'
18998 3' -61.1 NC_004684.1 + 11641 0.66 0.45348
Target:  5'- uGACCGUCGgcaUCGGC-CaCGCCAGCacgGCGg -3'
miRNA:   3'- -UUGGCAGCa--GGUCGcG-GUGGUCG---CGC- -5'
18998 3' -61.1 NC_004684.1 + 52749 0.66 0.425674
Target:  5'- ---gGUCGUCguG-GCCGCUGGCGCa -3'
miRNA:   3'- uuggCAGCAGguCgCGGUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 38260 0.66 0.434831
Target:  5'- uAACUGcucgcgguguuaUCGUCCGGCGaCCAUgcGCGCGa -3'
miRNA:   3'- -UUGGC------------AGCAGGUCGC-GGUGguCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 6137 0.66 0.422949
Target:  5'- -cUCGUCGUCguugagcaguucgaCGGCgGCgGCCAGCGUGc -3'
miRNA:   3'- uuGGCAGCAG--------------GUCG-CGgUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 46830 0.66 0.425674
Target:  5'- cACUGUCGgcaaCCGGCGCucagCugCGGCGUa -3'
miRNA:   3'- uUGGCAGCa---GGUCGCG----GugGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 54500 0.66 0.444101
Target:  5'- cGCCGguaagcUCGUaCC-GCGCuCACCGGCGgGg -3'
miRNA:   3'- uUGGC------AGCA-GGuCGCG-GUGGUCGCgC- -5'
18998 3' -61.1 NC_004684.1 + 57126 0.66 0.444101
Target:  5'- uGCCGUgGcCCAccGUGaCCgACCAGCGCa -3'
miRNA:   3'- uUGGCAgCaGGU--CGC-GG-UGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 54256 0.66 0.436676
Target:  5'- cGCCGggacagcuccucagCCAGCGCCGCCAcccggccggggguGCGCGc -3'
miRNA:   3'- uUGGCagca----------GGUCGCGGUGGU-------------CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.