miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18998 3' -61.1 NC_004684.1 + 30815 0.69 0.317112
Target:  5'- uGCCGUCGggcaccaaccggaUCguGCucgagccgaugGUCACCAGCGCGg -3'
miRNA:   3'- uUGGCAGC-------------AGguCG-----------CGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 42215 0.7 0.268883
Target:  5'- uGGCCGaCGUggccgCCGGUGUcggCACCGGCGCGa -3'
miRNA:   3'- -UUGGCaGCA-----GGUCGCG---GUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 3690 0.69 0.289089
Target:  5'- cGCUGgcaggagaUCG-CCAGCGCCGCC-GCGCu -3'
miRNA:   3'- uUGGC--------AGCaGGUCGCGGUGGuCGCGc -5'
18998 3' -61.1 NC_004684.1 + 46459 0.69 0.30321
Target:  5'- cGCgGUgGgCCAGgGCCACCAcGCGCu -3'
miRNA:   3'- uUGgCAgCaGGUCgCGGUGGU-CGCGc -5'
18998 3' -61.1 NC_004684.1 + 13731 0.69 0.30321
Target:  5'- cGCUGUCGgUCGGUGCCACCaccucGGUGCu -3'
miRNA:   3'- uUGGCAGCaGGUCGCGGUGG-----UCGCGc -5'
18998 3' -61.1 NC_004684.1 + 20606 0.69 0.30321
Target:  5'- cGCCGagCGUcuaccugggcaCCGGCGagCGCCAGCGCGu -3'
miRNA:   3'- uUGGCa-GCA-----------GGUCGCg-GUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 61865 0.69 0.30321
Target:  5'- cGCC-UCaUCCAcagcuGCGCCACCAGgGCGu -3'
miRNA:   3'- uUGGcAGcAGGU-----CGCGGUGGUCgCGC- -5'
18998 3' -61.1 NC_004684.1 + 59516 0.69 0.309736
Target:  5'- gGGCgCGUCGUaggCCuGCGCacagguccugcacCGCCAGCGCGc -3'
miRNA:   3'- -UUG-GCAGCA---GGuCGCG-------------GUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 26377 0.69 0.313407
Target:  5'- cACCGgcaaCGUCggCGGCgaucuggccaacgccGCCACCGGCGCGc -3'
miRNA:   3'- uUGGCa---GCAG--GUCG---------------CGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 18934 0.7 0.268229
Target:  5'- aGGCCcUUGUCCauguagcGGCGCaggauGCCAGCGCGg -3'
miRNA:   3'- -UUGGcAGCAGG-------UCGCGg----UGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 23513 0.7 0.262405
Target:  5'- --aCGcUGUCCGGCGUCACCAGCcuGCu -3'
miRNA:   3'- uugGCaGCAGGUCGCGGUGGUCG--CGc -5'
18998 3' -61.1 NC_004684.1 + 21318 0.71 0.237759
Target:  5'- aGGCgGUgGUCCGGCGCgACCGcCGCa -3'
miRNA:   3'- -UUGgCAgCAGGUCGCGgUGGUcGCGc -5'
18998 3' -61.1 NC_004684.1 + 10383 0.73 0.170777
Target:  5'- cACCGcCGgguaCCAG-GCCGCCAGCGUGc -3'
miRNA:   3'- uUGGCaGCa---GGUCgCGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 47169 0.72 0.175265
Target:  5'- cACCGUagCGgcggCCAGgGCCGCCGcuGCGCGg -3'
miRNA:   3'- uUGGCA--GCa---GGUCgCGGUGGU--CGCGC- -5'
18998 3' -61.1 NC_004684.1 + 8044 0.72 0.179858
Target:  5'- uGGCgGUCcUCCAGCGCCAgCAGgGUGc -3'
miRNA:   3'- -UUGgCAGcAGGUCGCGGUgGUCgCGC- -5'
18998 3' -61.1 NC_004684.1 + 50022 0.72 0.184558
Target:  5'- cACCGUCGgcggCAGCGUgGCCGGUGCc -3'
miRNA:   3'- uUGGCAGCag--GUCGCGgUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 42634 0.72 0.189365
Target:  5'- cGCCGcCGgugCUGGUGCCGCCAGCGa- -3'
miRNA:   3'- uUGGCaGCa--GGUCGCGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 25766 0.72 0.194282
Target:  5'- cGGCCuggCGUCCGGCuCCACCGGCgGCa -3'
miRNA:   3'- -UUGGca-GCAGGUCGcGGUGGUCG-CGc -5'
18998 3' -61.1 NC_004684.1 + 25445 0.71 0.215081
Target:  5'- uGGCCuGUCGgacugcUCCGGUGCCAUCAGCGa- -3'
miRNA:   3'- -UUGG-CAGC------AGGUCGCGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 20022 0.71 0.231908
Target:  5'- aGGCCGUgGUgCCugaagacccCGCCAUCAGCGCGg -3'
miRNA:   3'- -UUGGCAgCA-GGuc-------GCGGUGGUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.