miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18998 3' -61.1 NC_004684.1 + 468 0.66 0.452537
Target:  5'- gGGCCGUCgGUCuCGGCcaggucgcgcaugGCCAUCAGgGUGu -3'
miRNA:   3'- -UUGGCAG-CAG-GUCG-------------CGGUGGUCgCGC- -5'
18998 3' -61.1 NC_004684.1 + 847 0.73 0.170777
Target:  5'- cGGCgGU-GUCCaggAGCGCCGCCAGgGCGu -3'
miRNA:   3'- -UUGgCAgCAGG---UCGCGGUGGUCgCGC- -5'
18998 3' -61.1 NC_004684.1 + 1164 0.81 0.040359
Target:  5'- cACCGaucaCGUCCAGCGCCGCCAGCcaGCa -3'
miRNA:   3'- uUGGCa---GCAGGUCGCGGUGGUCG--CGc -5'
18998 3' -61.1 NC_004684.1 + 1275 0.79 0.061279
Target:  5'- uGCCGUaguaGUCCAGCGCCugCGGCuCGg -3'
miRNA:   3'- uUGGCAg---CAGGUCGCGGugGUCGcGC- -5'
18998 3' -61.1 NC_004684.1 + 2096 0.69 0.296084
Target:  5'- --aCGUCGgggcggUCCAGCGCCcagGCCAGCaGUGu -3'
miRNA:   3'- uugGCAGC------AGGUCGCGG---UGGUCG-CGC- -5'
18998 3' -61.1 NC_004684.1 + 2185 0.72 0.179858
Target:  5'- cGCCGUaGUgCuGCGCCACCAGuUGCGa -3'
miRNA:   3'- uUGGCAgCAgGuCGCGGUGGUC-GCGC- -5'
18998 3' -61.1 NC_004684.1 + 2956 0.72 0.179858
Target:  5'- cAGCagGUCGUCCGGCGCgACCAGgaaccCGUGg -3'
miRNA:   3'- -UUGg-CAGCAGGUCGCGgUGGUC-----GCGC- -5'
18998 3' -61.1 NC_004684.1 + 3356 0.69 0.289089
Target:  5'- aGugCGUCcacgauGUCCGGCcagGCCAgCAGCGUGg -3'
miRNA:   3'- -UugGCAG------CAGGUCG---CGGUgGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 3690 0.69 0.289089
Target:  5'- cGCUGgcaggagaUCG-CCAGCGCCGCC-GCGCu -3'
miRNA:   3'- uUGGC--------AGCaGGUCGCGGUGGuCGCGc -5'
18998 3' -61.1 NC_004684.1 + 4505 0.66 0.462013
Target:  5'- cGCgCGUUGuUCCGGCgGCCaggacuuGCUGGCGCGa -3'
miRNA:   3'- uUG-GCAGC-AGGUCG-CGG-------UGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 5772 0.69 0.296084
Target:  5'- cACCGgCGUCaGGaUGCCACCGGCGUu -3'
miRNA:   3'- uUGGCaGCAGgUC-GCGGUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 6021 0.72 0.199311
Target:  5'- gGACCGccCGguggCCAGCGCgGCCAGC-CGg -3'
miRNA:   3'- -UUGGCa-GCa---GGUCGCGgUGGUCGcGC- -5'
18998 3' -61.1 NC_004684.1 + 6067 0.72 0.189365
Target:  5'- aGGCCGggacuucgcUCGgCCGGuCGCuCACCGGCGCGg -3'
miRNA:   3'- -UUGGC---------AGCaGGUC-GCG-GUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 6137 0.66 0.422949
Target:  5'- -cUCGUCGUCguugagcaguucgaCGGCgGCgGCCAGCGUGc -3'
miRNA:   3'- uuGGCAGCAG--------------GUCG-CGgUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 6169 0.7 0.268883
Target:  5'- aGGCCG-CccCCGGCaucgGCUACCAGCGCGg -3'
miRNA:   3'- -UUGGCaGcaGGUCG----CGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 6877 0.81 0.043891
Target:  5'- uGGCCGUCGUCCAGUG-CACCGGCGa- -3'
miRNA:   3'- -UUGGCAGCAGGUCGCgGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 7446 0.67 0.416633
Target:  5'- gAugCGUUcUCCacGGCGCgCACCGGCGgGu -3'
miRNA:   3'- -UugGCAGcAGG--UCGCG-GUGGUCGCgC- -5'
18998 3' -61.1 NC_004684.1 + 7528 0.66 0.462013
Target:  5'- cAGCCaGUCGgcgaaacgggUCAGUGCCugguagcGCCAGCGCc -3'
miRNA:   3'- -UUGG-CAGCa---------GGUCGCGG-------UGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 7655 0.66 0.462966
Target:  5'- cAGCCG-Ca-CCAGCGCCACCcGGgGCc -3'
miRNA:   3'- -UUGGCaGcaGGUCGCGGUGG-UCgCGc -5'
18998 3' -61.1 NC_004684.1 + 8044 0.72 0.179858
Target:  5'- uGGCgGUCcUCCAGCGCCAgCAGgGUGc -3'
miRNA:   3'- -UUGgCAGcAGGUCGCGGUgGUCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.