miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18998 3' -61.1 NC_004684.1 + 66970 0.71 0.22057
Target:  5'- cGCCGaaggUCGccaCCGGCGCUgacgugcugGCCAGCGCGg -3'
miRNA:   3'- uUGGC----AGCa--GGUCGCGG---------UGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 66883 0.67 0.381674
Target:  5'- cGCCGguggCGaccUUCGGCGCgGCCuucGGCGCGg -3'
miRNA:   3'- uUGGCa---GC---AGGUCGCGgUGG---UCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 66808 0.67 0.398908
Target:  5'- aGACCGUCa-CCGaguuCGCCGCgCAGCGCa -3'
miRNA:   3'- -UUGGCAGcaGGUc---GCGGUG-GUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 66413 0.67 0.40771
Target:  5'- cACCGggaCGUUCgAGCGCUACUAcGCGCc -3'
miRNA:   3'- uUGGCa--GCAGG-UCGCGGUGGU-CGCGc -5'
18998 3' -61.1 NC_004684.1 + 65867 0.69 0.317856
Target:  5'- -gUCGcCGUgCGcGCGcCCACCGGCGCGc -3'
miRNA:   3'- uuGGCaGCAgGU-CGC-GGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 65518 0.67 0.398908
Target:  5'- cGCCGcaCG-CCAGCGCagCGCCuGGCGCGc -3'
miRNA:   3'- uUGGCa-GCaGGUCGCG--GUGG-UCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 65450 0.68 0.348725
Target:  5'- uGACCGUCGcCCugguggcccugGGgGCCGCCAuCGUGg -3'
miRNA:   3'- -UUGGCAGCaGG-----------UCgCGGUGGUcGCGC- -5'
18998 3' -61.1 NC_004684.1 + 65342 0.68 0.356769
Target:  5'- aGGCCacgauggCGgcccCCAGgGCCACCAGgGCGa -3'
miRNA:   3'- -UUGGca-----GCa---GGUCgCGGUGGUCgCGC- -5'
18998 3' -61.1 NC_004684.1 + 63497 0.67 0.40771
Target:  5'- cAGCUG-CG-CCuGCGCCAgCAGgGCGg -3'
miRNA:   3'- -UUGGCaGCaGGuCGCGGUgGUCgCGC- -5'
18998 3' -61.1 NC_004684.1 + 63320 0.66 0.462966
Target:  5'- gGGCCGaCGcCCGGCaacgaGCCGCCGGUGg- -3'
miRNA:   3'- -UUGGCaGCaGGUCG-----CGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 63038 0.66 0.472556
Target:  5'- cACCaUCGU-CGGCGCgCGCC-GCGCGc -3'
miRNA:   3'- uUGGcAGCAgGUCGCG-GUGGuCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 62706 0.68 0.348725
Target:  5'- uGCgCGUCG-CCagcaAGCGCC-UCGGCGCGg -3'
miRNA:   3'- uUG-GCAGCaGG----UCGCGGuGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 62207 0.75 0.11454
Target:  5'- uGCCGUCcuggccaaCCAGCGCCACCucgacaucgggguAGCGCGg -3'
miRNA:   3'- uUGGCAGca------GGUCGCGGUGG-------------UCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 62090 0.66 0.444101
Target:  5'- -cCCGUCGcgaUUguGCGCgGCgGGUGCGg -3'
miRNA:   3'- uuGGCAGC---AGguCGCGgUGgUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 61865 0.69 0.30321
Target:  5'- cGCC-UCaUCCAcagcuGCGCCACCAGgGCGu -3'
miRNA:   3'- uUGGcAGcAGGU-----CGCGGUGGUCgCGC- -5'
18998 3' -61.1 NC_004684.1 + 61766 0.67 0.390229
Target:  5'- gAACCaggCGUCCAGCuCCagcACCAuGCGCGc -3'
miRNA:   3'- -UUGGca-GCAGGUCGcGG---UGGU-CGCGC- -5'
18998 3' -61.1 NC_004684.1 + 61593 0.68 0.325377
Target:  5'- uGCUGgcgCGcaUCgAGCGCCGCCGccuGCGCGg -3'
miRNA:   3'- uUGGCa--GC--AGgUCGCGGUGGU---CGCGC- -5'
18998 3' -61.1 NC_004684.1 + 60151 0.73 0.149847
Target:  5'- gGGCCGcCGggCCGcGCGCCACgAGUGCGa -3'
miRNA:   3'- -UUGGCaGCa-GGU-CGCGGUGgUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 59929 0.68 0.325377
Target:  5'- --gCGUCGgugUCCGGCcCCACguGCGCGu -3'
miRNA:   3'- uugGCAGC---AGGUCGcGGUGguCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 59560 0.67 0.381674
Target:  5'- cGCCGUUGUcgcaCCAGCGCaugucCAUCAGcCGCa -3'
miRNA:   3'- uUGGCAGCA----GGUCGCG-----GUGGUC-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.