miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18998 3' -61.1 NC_004684.1 + 46830 0.66 0.425674
Target:  5'- cACUGUCGgcaaCCGGCGCucagCugCGGCGUa -3'
miRNA:   3'- uUGGCAGCa---GGUCGCG----GugGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 52749 0.66 0.425674
Target:  5'- ---gGUCGUCguG-GCCGCUGGCGCa -3'
miRNA:   3'- uuggCAGCAGguCgCGGUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 12880 0.66 0.425674
Target:  5'- aGGCCGcCG-CCGGggagccugcgcuCGCCGCCAGCGg- -3'
miRNA:   3'- -UUGGCaGCaGGUC------------GCGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 23992 0.66 0.425674
Target:  5'- aAGCCGUCG-CCAG-GCCAgCAGUucGCc -3'
miRNA:   3'- -UUGGCAGCaGGUCgCGGUgGUCG--CGc -5'
18998 3' -61.1 NC_004684.1 + 7655 0.66 0.462966
Target:  5'- cAGCCG-Ca-CCAGCGCCACCcGGgGCc -3'
miRNA:   3'- -UUGGCaGcaGGUCGCGGUGG-UCgCGc -5'
18998 3' -61.1 NC_004684.1 + 468 0.66 0.452537
Target:  5'- gGGCCGUCgGUCuCGGCcaggucgcgcaugGCCAUCAGgGUGu -3'
miRNA:   3'- -UUGGCAG-CAG-GUCG-------------CGGUGGUCgCGC- -5'
18998 3' -61.1 NC_004684.1 + 36744 0.66 0.425674
Target:  5'- cGCCGUC--CCGGCgcugacGCCGCCAGgGCc -3'
miRNA:   3'- uUGGCAGcaGGUCG------CGGUGGUCgCGc -5'
18998 3' -61.1 NC_004684.1 + 25111 0.66 0.462966
Target:  5'- uGCCGcC-UCCAGCuG-CACCGGCGCu -3'
miRNA:   3'- uUGGCaGcAGGUCG-CgGUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 57126 0.66 0.444101
Target:  5'- uGCCGUgGcCCAccGUGaCCgACCAGCGCa -3'
miRNA:   3'- uUGGCAgCaGGU--CGC-GG-UGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 11641 0.66 0.45348
Target:  5'- uGACCGUCGgcaUCGGC-CaCGCCAGCacgGCGg -3'
miRNA:   3'- -UUGGCAGCa--GGUCGcG-GUGGUCG---CGC- -5'
18998 3' -61.1 NC_004684.1 + 26550 0.66 0.462966
Target:  5'- aGGCCGggguguacgCGuUCCGGCGCgCcCUGGCGCGc -3'
miRNA:   3'- -UUGGCa--------GC-AGGUCGCG-GuGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 54256 0.66 0.436676
Target:  5'- cGCCGggacagcuccucagCCAGCGCCGCCAcccggccggggguGCGCGc -3'
miRNA:   3'- uUGGCagca----------GGUCGCGGUGGU-------------CGCGC- -5'
18998 3' -61.1 NC_004684.1 + 15631 0.66 0.444101
Target:  5'- cGCCGguccaccaacgCGgaUCAGCGCCuCCAGCGCc -3'
miRNA:   3'- uUGGCa----------GCa-GGUCGCGGuGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 24182 0.67 0.416633
Target:  5'- uGCCGcCGcccaaaaugCCGGUGCCugCGGUGCc -3'
miRNA:   3'- uUGGCaGCa--------GGUCGCGGugGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 34072 0.67 0.416633
Target:  5'- cACCGgCGaCCcuGGCGCgGCgGGCGCGa -3'
miRNA:   3'- uUGGCaGCaGG--UCGCGgUGgUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 66808 0.67 0.398908
Target:  5'- aGACCGUCa-CCGaguuCGCCGCgCAGCGCa -3'
miRNA:   3'- -UUGGCAGcaGGUc---GCGGUG-GUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 26933 0.67 0.390229
Target:  5'- cGCUGgugcUCGaCCGGU-CCACCAGCGCGc -3'
miRNA:   3'- uUGGC----AGCaGGUCGcGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 31748 0.67 0.390229
Target:  5'- cACCGcCGacagugCCAGCGUC-CCGGCGgGg -3'
miRNA:   3'- uUGGCaGCa-----GGUCGCGGuGGUCGCgC- -5'
18998 3' -61.1 NC_004684.1 + 31099 0.67 0.381674
Target:  5'- cACCGgucggCGUCaggcccagcuGCGCCAUCAGCGUc -3'
miRNA:   3'- uUGGCa----GCAGgu--------CGCGGUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 22468 0.67 0.373245
Target:  5'- cGCCGccugcaCGUCCA---CCGCCAGCGCGa -3'
miRNA:   3'- uUGGCa-----GCAGGUcgcGGUGGUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.