miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18999 3' -54 NC_004684.1 + 15071 1.1 0.001286
Target:  5'- aGGCGCAGGUUCUGCGUUGCACGCAAGc -3'
miRNA:   3'- -CCGCGUCCAAGACGCAACGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 57588 0.75 0.307312
Target:  5'- cGGCGCAGGcacCUGCGUgcgGCGCuugucgacgguggGCAGGa -3'
miRNA:   3'- -CCGCGUCCaa-GACGCAa--CGUG-------------CGUUC- -5'
18999 3' -54 NC_004684.1 + 65864 0.72 0.465025
Target:  5'- aGCGCGGGUcgcgucgucgccguUgaGCGcgGCGCGCAGGu -3'
miRNA:   3'- cCGCGUCCA--------------AgaCGCaaCGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 1701 0.71 0.530152
Target:  5'- cGGUGCAGGUgccggaacugCUGCuccUGCACGCuGGc -3'
miRNA:   3'- -CCGCGUCCAa---------GACGca-ACGUGCGuUC- -5'
18999 3' -54 NC_004684.1 + 9876 0.71 0.551543
Target:  5'- cGGCGCAGGgccUCgGCGUagaggucuUcCACGCAGGc -3'
miRNA:   3'- -CCGCGUCCa--AGaCGCA--------AcGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 34843 0.7 0.572102
Target:  5'- uGCGCAugcagccgugggcGGUUCcgcGCGUUGUGCGCGAc -3'
miRNA:   3'- cCGCGU-------------CCAAGa--CGCAACGUGCGUUc -5'
18999 3' -54 NC_004684.1 + 59763 0.7 0.584088
Target:  5'- cGGCGCAGGaaagggUCaaUGCGcgacugGCGCGCAu- -3'
miRNA:   3'- -CCGCGUCCa-----AG--ACGCaa----CGUGCGUuc -5'
18999 3' -54 NC_004684.1 + 13909 0.7 0.584088
Target:  5'- cGGCGCAacgccuucgauGGUg--GCGUUGCGgGCGAc -3'
miRNA:   3'- -CCGCGU-----------CCAagaCGCAACGUgCGUUc -5'
18999 3' -54 NC_004684.1 + 4773 0.7 0.584088
Target:  5'- cGCGCguucGGGUugagCUGCaagGCACGCAGGa -3'
miRNA:   3'- cCGCG----UCCAa---GACGcaaCGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 22210 0.7 0.58846
Target:  5'- uGGCGCAGGUggccuccCUGCGcgacgGCacccgcgcgaucaacGCGCAGGc -3'
miRNA:   3'- -CCGCGUCCAa------GACGCaa---CG---------------UGCGUUC- -5'
18999 3' -54 NC_004684.1 + 20985 0.69 0.650014
Target:  5'- cGGCGCAGGUcggcccgaucCUGCGgcGCACcCAu- -3'
miRNA:   3'- -CCGCGUCCAa---------GACGCaaCGUGcGUuc -5'
18999 3' -54 NC_004684.1 + 10490 0.68 0.682886
Target:  5'- uGGCGU-GGUUCUGCac-GCugGCGGc -3'
miRNA:   3'- -CCGCGuCCAAGACGcaaCGugCGUUc -5'
18999 3' -54 NC_004684.1 + 21217 0.68 0.682886
Target:  5'- cGCGCAGGcgCUucacuucuggugGCGUgGC-CGCGAGg -3'
miRNA:   3'- cCGCGUCCaaGA------------CGCAaCGuGCGUUC- -5'
18999 3' -54 NC_004684.1 + 52317 0.68 0.693761
Target:  5'- cGCGCAG---CUGCGcgGUGCGCAGGc -3'
miRNA:   3'- cCGCGUCcaaGACGCaaCGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 13083 0.68 0.704576
Target:  5'- cGGUGCGccccGGUUCgcGCGgUGCACGCc-- -3'
miRNA:   3'- -CCGCGU----CCAAGa-CGCaACGUGCGuuc -5'
18999 3' -54 NC_004684.1 + 63483 0.68 0.704576
Target:  5'- gGGCGCgAGGccuccagCUGCGccUGCGCcaGCAGGg -3'
miRNA:   3'- -CCGCG-UCCaa-----GACGCa-ACGUG--CGUUC- -5'
18999 3' -54 NC_004684.1 + 14452 0.68 0.71425
Target:  5'- cGCGCucuugauGGUcgcguugUCgGCGUUGUACGCGAu -3'
miRNA:   3'- cCGCGu------CCA-------AGaCGCAACGUGCGUUc -5'
18999 3' -54 NC_004684.1 + 4446 0.68 0.725984
Target:  5'- uGGCGCAGcuggaggCcGCacgUGCGCGCGAGg -3'
miRNA:   3'- -CCGCGUCcaa----GaCGca-ACGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 56075 0.68 0.725984
Target:  5'- aGGCGUggAGGUgCUGUGcgGCAUGCuGGc -3'
miRNA:   3'- -CCGCG--UCCAaGACGCaaCGUGCGuUC- -5'
18999 3' -54 NC_004684.1 + 23768 0.68 0.725984
Target:  5'- gGGcCGUGGGgcgCgGCGUUGgGCGCGAu -3'
miRNA:   3'- -CC-GCGUCCaa-GaCGCAACgUGCGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.