miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18999 3' -54 NC_004684.1 + 199 0.66 0.825578
Target:  5'- gGGUGCAGGUgUUGCGc--CGgGCGAGc -3'
miRNA:   3'- -CCGCGUCCAaGACGCaacGUgCGUUC- -5'
18999 3' -54 NC_004684.1 + 1701 0.71 0.530152
Target:  5'- cGGUGCAGGUgccggaacugCUGCuccUGCACGCuGGc -3'
miRNA:   3'- -CCGCGUCCAa---------GACGca-ACGUGCGuUC- -5'
18999 3' -54 NC_004684.1 + 1779 0.66 0.80695
Target:  5'- aGGUGCAGGUUCggGCccggGUGCGUcGGu -3'
miRNA:   3'- -CCGCGUCCAAGa-CGcaa-CGUGCGuUC- -5'
18999 3' -54 NC_004684.1 + 4446 0.68 0.725984
Target:  5'- uGGCGCAGcuggaggCcGCacgUGCGCGCGAGg -3'
miRNA:   3'- -CCGCGUCcaa----GaCGca-ACGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 4773 0.7 0.584088
Target:  5'- cGCGCguucGGGUugagCUGCaagGCACGCAGGa -3'
miRNA:   3'- cCGCG----UCCAa---GACGcaaCGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 5776 0.66 0.80695
Target:  5'- gGGCGCAGcGcgcuaCUGCGccagGCGUGCGAGg -3'
miRNA:   3'- -CCGCGUC-Caa---GACGCaa--CGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 8543 0.67 0.786604
Target:  5'- uGGCGCgcaccggggagucAGGUUCccuggcccgGCGg-GCGCGCGGGu -3'
miRNA:   3'- -CCGCG-------------UCCAAGa--------CGCaaCGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 9876 0.71 0.551543
Target:  5'- cGGCGCAGGgccUCgGCGUagaggucuUcCACGCAGGc -3'
miRNA:   3'- -CCGCGUCCa--AGaCGCA--------AcGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 10490 0.68 0.682886
Target:  5'- uGGCGU-GGUUCUGCac-GCugGCGGc -3'
miRNA:   3'- -CCGCGuCCAAGACGcaaCGugCGUUc -5'
18999 3' -54 NC_004684.1 + 13083 0.68 0.704576
Target:  5'- cGGUGCGccccGGUUCgcGCGgUGCACGCc-- -3'
miRNA:   3'- -CCGCGU----CCAAGa-CGCaACGUGCGuuc -5'
18999 3' -54 NC_004684.1 + 13572 0.66 0.834591
Target:  5'- cGGCGguGGggUUGCcGUUGC-CGUc-- -3'
miRNA:   3'- -CCGCguCCaaGACG-CAACGuGCGuuc -5'
18999 3' -54 NC_004684.1 + 13909 0.7 0.584088
Target:  5'- cGGCGCAacgccuucgauGGUg--GCGUUGCGgGCGAc -3'
miRNA:   3'- -CCGCGU-----------CCAagaCGCAACGUgCGUUc -5'
18999 3' -54 NC_004684.1 + 14452 0.68 0.71425
Target:  5'- cGCGCucuugauGGUcgcguugUCgGCGUUGUACGCGAu -3'
miRNA:   3'- cCGCGu------CCA-------AGaCGCAACGUGCGUUc -5'
18999 3' -54 NC_004684.1 + 15071 1.1 0.001286
Target:  5'- aGGCGCAGGUUCUGCGUUGCACGCAAGc -3'
miRNA:   3'- -CCGCGUCCAAGACGCAACGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 20985 0.69 0.650014
Target:  5'- cGGCGCAGGUcggcccgaucCUGCGgcGCACcCAu- -3'
miRNA:   3'- -CCGCGUCCAa---------GACGCaaCGUGcGUuc -5'
18999 3' -54 NC_004684.1 + 21217 0.68 0.682886
Target:  5'- cGCGCAGGcgCUucacuucuggugGCGUgGC-CGCGAGg -3'
miRNA:   3'- cCGCGUCCaaGA------------CGCAaCGuGCGUUC- -5'
18999 3' -54 NC_004684.1 + 22210 0.7 0.58846
Target:  5'- uGGCGCAGGUggccuccCUGCGcgacgGCacccgcgcgaucaacGCGCAGGc -3'
miRNA:   3'- -CCGCGUCCAa------GACGCaa---CG---------------UGCGUUC- -5'
18999 3' -54 NC_004684.1 + 23768 0.68 0.725984
Target:  5'- gGGcCGUGGGgcgCgGCGUUGgGCGCGAu -3'
miRNA:   3'- -CC-GCGUCCaa-GaCGCAACgUGCGUUc -5'
18999 3' -54 NC_004684.1 + 26570 0.67 0.767582
Target:  5'- cGGCGCGcccuGGcgCgcgGCGgUGUGCGCGGGu -3'
miRNA:   3'- -CCGCGU----CCaaGa--CGCaACGUGCGUUC- -5'
18999 3' -54 NC_004684.1 + 29811 0.66 0.804091
Target:  5'- cGGCGUugacgauggucuggAGGUUCUGgcccacgaCGUUGaCGCGCGc- -3'
miRNA:   3'- -CCGCG--------------UCCAAGAC--------GCAAC-GUGCGUuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.