miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19000 5' -60.3 NC_004684.1 + 16098 0.74 0.200357
Target:  5'- aCCACGccacCGUCCccGGAGCCGGacguuUCGGCc -3'
miRNA:   3'- -GGUGCa---GCAGGu-CCUCGGCC-----AGCCGc -5'
19000 5' -60.3 NC_004684.1 + 17641 0.67 0.486548
Target:  5'- gCACcUCGUCCAGGcGGuCCuGGUaGGCGa -3'
miRNA:   3'- gGUGcAGCAGGUCC-UC-GG-CCAgCCGC- -5'
19000 5' -60.3 NC_004684.1 + 18431 0.66 0.565703
Target:  5'- gCCGCcgGUCGgcUCCGGGGGC-GGcacCGGCGu -3'
miRNA:   3'- -GGUG--CAGC--AGGUCCUCGgCCa--GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 18547 0.72 0.262339
Target:  5'- aCCAgcucggugcCGUCGUCCugcucGGGAGCCacGUCGGCc -3'
miRNA:   3'- -GGU---------GCAGCAGG-----UCCUCGGc-CAGCCGc -5'
19000 5' -60.3 NC_004684.1 + 20256 0.66 0.555583
Target:  5'- gCGCGUCGaacgCCGcaaGGGCCGGgccgucacCGGCGa -3'
miRNA:   3'- gGUGCAGCa---GGUc--CUCGGCCa-------GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 20929 0.69 0.362603
Target:  5'- aCGCGUUGUCCGGGAaGCUGGcCaGGa- -3'
miRNA:   3'- gGUGCAGCAGGUCCU-CGGCCaG-CCgc -5'
19000 5' -60.3 NC_004684.1 + 21991 0.67 0.467559
Target:  5'- cCCGCG-CgGUCCAGGAgGCCauggGGcCGGUGc -3'
miRNA:   3'- -GGUGCaG-CAGGUCCU-CGG----CCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 23772 0.67 0.514709
Target:  5'- gCCACGcUCugGUCCGGGccgaccaGGCCG-UCGGUGu -3'
miRNA:   3'- -GGUGC-AG--CAGGUCC-------UCGGCcAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 29002 0.67 0.467559
Target:  5'- aCACGUCGUCCGGucgaucAGCggCGGUcgccaCGGCGc -3'
miRNA:   3'- gGUGCAGCAGGUCc-----UCG--GCCA-----GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 29755 0.67 0.477007
Target:  5'- gUCugGUCGgccgcgCgCAGGAGCaCGucGUUGGCGg -3'
miRNA:   3'- -GGugCAGCa-----G-GUCCUCG-GC--CAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 30153 0.68 0.448959
Target:  5'- gCGCGUCGgCCAGuGGGCgaucaacgccguCGG-CGGCGa -3'
miRNA:   3'- gGUGCAGCaGGUC-CUCG------------GCCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 30165 0.71 0.29532
Target:  5'- uCgGCGUCGgugaguggCCGGGAgGCCGGUaccaGGCu -3'
miRNA:   3'- -GgUGCAGCa-------GGUCCU-CGGCCAg---CCGc -5'
19000 5' -60.3 NC_004684.1 + 30628 0.66 0.525564
Target:  5'- cCCGCGacUgGUC--GGAGCCG-UCGGCGg -3'
miRNA:   3'- -GGUGC--AgCAGguCCUCGGCcAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 31028 0.66 0.552556
Target:  5'- uCCAgGUCGucgggcaggUCCAagguccacgccugcGGcauGCCGGUCGGUGu -3'
miRNA:   3'- -GGUgCAGC---------AGGU--------------CCu--CGGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 31117 0.7 0.33144
Target:  5'- aCAgGUCGUcCCAGaacucaCCGGUCGGCGu -3'
miRNA:   3'- gGUgCAGCA-GGUCcuc---GGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 31327 0.66 0.565703
Target:  5'- gCCAgGaCGUUgAGGAaaucaugguGUCGGUCGGCc -3'
miRNA:   3'- -GGUgCaGCAGgUCCU---------CGGCCAGCCGc -5'
19000 5' -60.3 NC_004684.1 + 31904 0.66 0.575871
Target:  5'- -gACGUUGUUCGcGGucggcauucuGCCGGUCGGgGc -3'
miRNA:   3'- ggUGCAGCAGGU-CCu---------CGGCCAGCCgC- -5'
19000 5' -60.3 NC_004684.1 + 32191 0.77 0.114937
Target:  5'- gCCGuCGUuccagcagaucggcaCGUCCGGGAGCCGGuUCGGUa -3'
miRNA:   3'- -GGU-GCA---------------GCAGGUCCUCGGCC-AGCCGc -5'
19000 5' -60.3 NC_004684.1 + 32256 0.67 0.505895
Target:  5'- gCGCGUCGgaCCuGuuGgCGGUCGGCGa -3'
miRNA:   3'- gGUGCAGCa-GGuCcuCgGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 36765 0.66 0.525564
Target:  5'- gCCAgGgccgCGcCCGGugccGAcGCUGGUCGGCGg -3'
miRNA:   3'- -GGUgCa---GCaGGUC----CU-CGGCCAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.