miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19000 5' -60.3 NC_004684.1 + 42574 0.66 0.565703
Target:  5'- gCCugGUCGUUggaCAGGAuGCCGaa-GGUGg -3'
miRNA:   3'- -GGugCAGCAG---GUCCU-CGGCcagCCGC- -5'
19000 5' -60.3 NC_004684.1 + 67480 0.66 0.565703
Target:  5'- -gGCGguauuuUCGUCguGGAGCCGGacacCGGgGg -3'
miRNA:   3'- ggUGC------AGCAGguCCUCGGCCa---GCCgC- -5'
19000 5' -60.3 NC_004684.1 + 8208 0.66 0.545515
Target:  5'- aCGCgGUCGUCCucGucaaugcuGCCGGUgGGCa -3'
miRNA:   3'- gGUG-CAGCAGGucCu-------CGGCCAgCCGc -5'
19000 5' -60.3 NC_004684.1 + 42493 0.66 0.58608
Target:  5'- cCCGCGUCGgcgCguuGGGGUCGG-CGGgGc -3'
miRNA:   3'- -GGUGCAGCa--Ggu-CCUCGGCCaGCCgC- -5'
19000 5' -60.3 NC_004684.1 + 20256 0.66 0.555583
Target:  5'- gCGCGUCGaacgCCGcaaGGGCCGGgccgucacCGGCGa -3'
miRNA:   3'- gGUGCAGCa---GGUc--CUCGGCCa-------GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 31904 0.66 0.575871
Target:  5'- -gACGUUGUUCGcGGucggcauucuGCCGGUCGGgGc -3'
miRNA:   3'- ggUGCAGCAGGU-CCu---------CGGCCAGCCgC- -5'
19000 5' -60.3 NC_004684.1 + 42977 0.66 0.545515
Target:  5'- -gGCGgucUCGgugCCAGaGGCCGGgcgugCGGCGg -3'
miRNA:   3'- ggUGC---AGCa--GGUCcUCGGCCa----GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 23772 0.67 0.514709
Target:  5'- gCCACGcUCugGUCCGGGccgaccaGGCCG-UCGGUGu -3'
miRNA:   3'- -GGUGC-AG--CAGGUCC-------UCGGCcAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 63242 0.67 0.496179
Target:  5'- aCCugGUUcggaGUCU--GAGCCGGUgccCGGCGg -3'
miRNA:   3'- -GGugCAG----CAGGucCUCGGCCA---GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 6350 0.67 0.515692
Target:  5'- -gGCGUUGUCCAu--GUCGG-CGGCGa -3'
miRNA:   3'- ggUGCAGCAGGUccuCGGCCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 29755 0.67 0.477007
Target:  5'- gUCugGUCGgccgcgCgCAGGAGCaCGucGUUGGCGg -3'
miRNA:   3'- -GGugCAGCa-----G-GUCCUCG-GC--CAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 848 0.67 0.50492
Target:  5'- uCgGCGgUGUCCAGGAgcGCCGccagggcGUCGGUGu -3'
miRNA:   3'- -GgUGCaGCAGGUCCU--CGGC-------CAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 17641 0.67 0.486548
Target:  5'- gCACcUCGUCCAGGcGGuCCuGGUaGGCGa -3'
miRNA:   3'- gGUGcAGCAGGUCC-UC-GG-CCAgCCGC- -5'
19000 5' -60.3 NC_004684.1 + 29002 0.67 0.467559
Target:  5'- aCACGUCGUCCGGucgaucAGCggCGGUcgccaCGGCGc -3'
miRNA:   3'- gGUGCAGCAGGUCc-----UCG--GCCA-----GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 51783 0.67 0.505895
Target:  5'- cUCGCGguacUCGUCCAGGuAGucCCGGUCcacGGCc -3'
miRNA:   3'- -GGUGC----AGCAGGUCC-UC--GGCCAG---CCGc -5'
19000 5' -60.3 NC_004684.1 + 21991 0.67 0.467559
Target:  5'- cCCGCG-CgGUCCAGGAgGCCauggGGcCGGUGc -3'
miRNA:   3'- -GGUGCaG-CAGGUCCU-CGG----CCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 48954 0.67 0.486548
Target:  5'- gCACGUCGgcgggCgGGGuGGCCGGggcgGGCGc -3'
miRNA:   3'- gGUGCAGCa----GgUCC-UCGGCCag--CCGC- -5'
19000 5' -60.3 NC_004684.1 + 32256 0.67 0.505895
Target:  5'- gCGCGUCGgaCCuGuuGgCGGUCGGCGa -3'
miRNA:   3'- gGUGCAGCa-GGuCcuCgGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 57399 0.67 0.50492
Target:  5'- gCCA-GUCGaCCGGGcagggcuGGCCGGggugCGGCu -3'
miRNA:   3'- -GGUgCAGCaGGUCC-------UCGGCCa---GCCGc -5'
19000 5' -60.3 NC_004684.1 + 12919 0.68 0.452647
Target:  5'- aCCACGUCGgcagcagagccgccgUCCucGGGCgCGucGUCGGCGg -3'
miRNA:   3'- -GGUGCAGC---------------AGGucCUCG-GC--CAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.