Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19000 | 5' | -60.3 | NC_004684.1 | + | 59434 | 0.66 | 0.545515 |
Target: 5'- gCCugG-CGgccuugcccaCCGGuGugcGCCGGUCGGCGg -3' miRNA: 3'- -GGugCaGCa---------GGUC-Cu--CGGCCAGCCGC- -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 31028 | 0.66 | 0.552556 |
Target: 5'- uCCAgGUCGucgggcaggUCCAagguccacgccugcGGcauGCCGGUCGGUGu -3' miRNA: 3'- -GGUgCAGC---------AGGU--------------CCu--CGGCCAGCCGC- -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 11684 | 0.66 | 0.555583 |
Target: 5'- gC-CGUCGUCCAGGcGCac--CGGCGg -3' miRNA: 3'- gGuGCAGCAGGUCCuCGgccaGCCGC- -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 42493 | 0.66 | 0.58608 |
Target: 5'- cCCGCGUCGgcgCguuGGGGUCGG-CGGgGc -3' miRNA: 3'- -GGUGCAGCa--Ggu-CCUCGGCCaGCCgC- -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 63037 | 0.66 | 0.525564 |
Target: 5'- aCCAuCGUCGgcgcgcgCCGcGcGCUGGUCGGCu -3' miRNA: 3'- -GGU-GCAGCa------GGUcCuCGGCCAGCCGc -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 30628 | 0.66 | 0.525564 |
Target: 5'- cCCGCGacUgGUC--GGAGCCG-UCGGCGg -3' miRNA: 3'- -GGUGC--AgCAGguCCUCGGCcAGCCGC- -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 13674 | 0.66 | 0.524574 |
Target: 5'- gCACG--GUCCAGGAcauggugGCCGGUUcgGGCa -3' miRNA: 3'- gGUGCagCAGGUCCU-------CGGCCAG--CCGc -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 36765 | 0.66 | 0.525564 |
Target: 5'- gCCAgGgccgCGcCCGGugccGAcGCUGGUCGGCGg -3' miRNA: 3'- -GGUgCa---GCaGGUC----CU-CGGCCAGCCGC- -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 64342 | 0.66 | 0.525564 |
Target: 5'- gCUugGUcaCGUCCuuGAacCCGGUCGGCGc -3' miRNA: 3'- -GGugCA--GCAGGucCUc-GGCCAGCCGC- -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 36860 | 0.66 | 0.525564 |
Target: 5'- aCCAgCGUCGgcaCCGGGcgcGGCCcuGG-CGGCGu -3' miRNA: 3'- -GGU-GCAGCa--GGUCC---UCGG--CCaGCCGC- -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 14090 | 0.66 | 0.555583 |
Target: 5'- gCCACugcaccgUGUCCAGGuGGCCGGgcuGGCc -3' miRNA: 3'- -GGUGca-----GCAGGUCC-UCGGCCag-CCGc -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 2294 | 0.66 | 0.535507 |
Target: 5'- aCCAUGUUGUCCucGGcguaguGGCCGuG-CGGCa -3' miRNA: 3'- -GGUGCAGCAGGu-CC------UCGGC-CaGCCGc -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 3638 | 0.66 | 0.555583 |
Target: 5'- gCGCGcCacCUGGGucauGCCGGUCGGCa -3' miRNA: 3'- gGUGCaGcaGGUCCu---CGGCCAGCCGc -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 31327 | 0.66 | 0.565703 |
Target: 5'- gCCAgGaCGUUgAGGAaaucaugguGUCGGUCGGCc -3' miRNA: 3'- -GGUgCaGCAGgUCCU---------CGGCCAGCCGc -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 45884 | 0.66 | 0.565703 |
Target: 5'- gCGCGcCGUCCAc--GCUGG-CGGCGa -3' miRNA: 3'- gGUGCaGCAGGUccuCGGCCaGCCGC- -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 31904 | 0.66 | 0.575871 |
Target: 5'- -gACGUUGUUCGcGGucggcauucuGCCGGUCGGgGc -3' miRNA: 3'- ggUGCAGCAGGU-CCu---------CGGCCAGCCgC- -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 60345 | 0.66 | 0.575871 |
Target: 5'- aCCGCGcguUCGgCCAGcGGuGCCaGGUCGGUc -3' miRNA: 3'- -GGUGC---AGCaGGUC-CU-CGG-CCAGCCGc -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 8208 | 0.66 | 0.545515 |
Target: 5'- aCGCgGUCGUCCucGucaaugcuGCCGGUgGGCa -3' miRNA: 3'- gGUG-CAGCAGGucCu-------CGGCCAgCCGc -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 42977 | 0.66 | 0.545515 |
Target: 5'- -gGCGgucUCGgugCCAGaGGCCGGgcgugCGGCGg -3' miRNA: 3'- ggUGC---AGCa--GGUCcUCGGCCa----GCCGC- -5' |
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19000 | 5' | -60.3 | NC_004684.1 | + | 55848 | 0.66 | 0.535507 |
Target: 5'- cUCAuuCGUCGUCCucuGcGGGCCGGUgcaaCGGgGa -3' miRNA: 3'- -GGU--GCAGCAGGu--C-CUCGGCCA----GCCgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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