miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19000 5' -60.3 NC_004684.1 + 15128 1.1 0.000458
Target:  5'- cCCACGUCGUCCAGGAGCCGGUCGGCGa -3'
miRNA:   3'- -GGUGCAGCAGGUCCUCGGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 32191 0.77 0.114937
Target:  5'- gCCGuCGUuccagcagaucggcaCGUCCGGGAGCCGGuUCGGUa -3'
miRNA:   3'- -GGU-GCA---------------GCAGGUCCUCGGCC-AGCCGc -5'
19000 5' -60.3 NC_004684.1 + 13033 0.75 0.163648
Target:  5'- uUACGUCG-CC-GG-GCCGGUCGGCu -3'
miRNA:   3'- gGUGCAGCaGGuCCuCGGCCAGCCGc -5'
19000 5' -60.3 NC_004684.1 + 16098 0.74 0.200357
Target:  5'- aCCACGccacCGUCCccGGAGCCGGacguuUCGGCc -3'
miRNA:   3'- -GGUGCa---GCAGGu-CCUCGGCC-----AGCCGc -5'
19000 5' -60.3 NC_004684.1 + 40550 0.73 0.215878
Target:  5'- uCCGCGaCcUCCAGGAGCUGGgcgaagcccUCGGUGa -3'
miRNA:   3'- -GGUGCaGcAGGUCCUCGGCC---------AGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 13454 0.73 0.226788
Target:  5'- aCCACGUCGgauggugauuUCCGGGAgGCUgaucaGGUCGGuCGg -3'
miRNA:   3'- -GGUGCAGC----------AGGUCCU-CGG-----CCAGCC-GC- -5'
19000 5' -60.3 NC_004684.1 + 55095 0.72 0.244026
Target:  5'- cCCugGUgcCGUUugccgCAGGAGCCguccgcuguGGUCGGCGg -3'
miRNA:   3'- -GGugCA--GCAG-----GUCCUCGG---------CCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 18547 0.72 0.262339
Target:  5'- aCCAgcucggugcCGUCGUCCugcucGGGAGCCacGUCGGCc -3'
miRNA:   3'- -GGU---------GCAGCAGG-----UCCUCGGc-CAGCCGc -5'
19000 5' -60.3 NC_004684.1 + 49307 0.72 0.26677
Target:  5'- gCCuuGcCGUCCAGGAucgacccgucggcgGCCauGGUCGGCGc -3'
miRNA:   3'- -GGugCaGCAGGUCCU--------------CGG--CCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 65119 0.72 0.268688
Target:  5'- uCCGCGUCGaggUCCAGGGuGuuGGUgGGgGu -3'
miRNA:   3'- -GGUGCAGC---AGGUCCU-CggCCAgCCgC- -5'
19000 5' -60.3 NC_004684.1 + 13045 0.71 0.279763
Target:  5'- gCCGCGUCGg-CGGGAGCaccgggggugccgaCGG-CGGCGa -3'
miRNA:   3'- -GGUGCAGCagGUCCUCG--------------GCCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 40588 0.71 0.288475
Target:  5'- gCGCGUCaaCCAGGuGCUGGcgcacUCGGCGc -3'
miRNA:   3'- gGUGCAGcaGGUCCuCGGCC-----AGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 30165 0.71 0.29532
Target:  5'- uCgGCGUCGgugaguggCCGGGAgGCCGGUaccaGGCu -3'
miRNA:   3'- -GgUGCAGCa-------GGUCCU-CGGCCAg---CCGc -5'
19000 5' -60.3 NC_004684.1 + 701 0.71 0.302292
Target:  5'- gCCAgGUCGUCCAGGucaggcGGCCcggaGGUCaGCu -3'
miRNA:   3'- -GGUgCAGCAGGUCC------UCGG----CCAGcCGc -5'
19000 5' -60.3 NC_004684.1 + 38120 0.71 0.309389
Target:  5'- gCGCGUacagggCGUCCAGGAaCUGGUCGcGCu -3'
miRNA:   3'- gGUGCA------GCAGGUCCUcGGCCAGC-CGc -5'
19000 5' -60.3 NC_004684.1 + 63900 0.7 0.323964
Target:  5'- gCCAgGUgGUCCAGGuaCCGGguaaCGGCGu -3'
miRNA:   3'- -GGUgCAgCAGGUCCucGGCCa---GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 31117 0.7 0.33144
Target:  5'- aCAgGUCGUcCCAGaacucaCCGGUCGGCGu -3'
miRNA:   3'- gGUgCAGCA-GGUCcuc---GGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 44914 0.7 0.354625
Target:  5'- -gGCGUCGgugcgcgCCGGGuAGUCGGU-GGCGa -3'
miRNA:   3'- ggUGCAGCa------GGUCC-UCGGCCAgCCGC- -5'
19000 5' -60.3 NC_004684.1 + 20929 0.69 0.362603
Target:  5'- aCGCGUUGUCCGGGAaGCUGGcCaGGa- -3'
miRNA:   3'- gGUGCAGCAGGUCCU-CGGCCaG-CCgc -5'
19000 5' -60.3 NC_004684.1 + 47893 0.69 0.387277
Target:  5'- aUCAgGUCGUaggCAGGccaCGGUCGGCGg -3'
miRNA:   3'- -GGUgCAGCAg--GUCCucgGCCAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.