miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19000 5' -60.3 NC_004684.1 + 6817 0.66 0.535507
Target:  5'- aCGcCGUCGgCCuggAGGAGCUGGccuaCGGCGc -3'
miRNA:   3'- gGU-GCAGCaGG---UCCUCGGCCa---GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 21991 0.67 0.467559
Target:  5'- cCCGCG-CgGUCCAGGAgGCCauggGGcCGGUGc -3'
miRNA:   3'- -GGUGCaG-CAGGUCCU-CGG----CCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 48954 0.67 0.486548
Target:  5'- gCACGUCGgcgggCgGGGuGGCCGGggcgGGCGc -3'
miRNA:   3'- gGUGCAGCa----GgUCC-UCGGCCag--CCGC- -5'
19000 5' -60.3 NC_004684.1 + 32256 0.67 0.505895
Target:  5'- gCGCGUCGgaCCuGuuGgCGGUCGGCGa -3'
miRNA:   3'- gGUGCAGCa-GGuCcuCgGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 51783 0.67 0.505895
Target:  5'- cUCGCGguacUCGUCCAGGuAGucCCGGUCcacGGCc -3'
miRNA:   3'- -GGUGC----AGCAGGUCC-UC--GGCCAG---CCGc -5'
19000 5' -60.3 NC_004684.1 + 6350 0.67 0.515692
Target:  5'- -gGCGUUGUCCAu--GUCGG-CGGCGa -3'
miRNA:   3'- ggUGCAGCAGGUccuCGGCCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 13674 0.66 0.524574
Target:  5'- gCACG--GUCCAGGAcauggugGCCGGUUcgGGCa -3'
miRNA:   3'- gGUGCagCAGGUCCU-------CGGCCAG--CCGc -5'
19000 5' -60.3 NC_004684.1 + 36765 0.66 0.525564
Target:  5'- gCCAgGgccgCGcCCGGugccGAcGCUGGUCGGCGg -3'
miRNA:   3'- -GGUgCa---GCaGGUC----CU-CGGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 64342 0.66 0.525564
Target:  5'- gCUugGUcaCGUCCuuGAacCCGGUCGGCGc -3'
miRNA:   3'- -GGugCA--GCAGGucCUc-GGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 30153 0.68 0.448959
Target:  5'- gCGCGUCGgCCAGuGGGCgaucaacgccguCGG-CGGCGa -3'
miRNA:   3'- gGUGCAGCaGGUC-CUCG------------GCCaGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 50590 0.68 0.439814
Target:  5'- cCUAUGcCGUCgGGucGgCGGUCGGCGg -3'
miRNA:   3'- -GGUGCaGCAGgUCcuCgGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 44807 0.68 0.421847
Target:  5'- -uGCGUCGuaguuguagUCCGGGugggcgagcAGCgGGUUGGCGg -3'
miRNA:   3'- ggUGCAGC---------AGGUCC---------UCGgCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 13033 0.75 0.163648
Target:  5'- uUACGUCG-CC-GG-GCCGGUCGGCu -3'
miRNA:   3'- gGUGCAGCaGGuCCuCGGCCAGCCGc -5'
19000 5' -60.3 NC_004684.1 + 40550 0.73 0.215878
Target:  5'- uCCGCGaCcUCCAGGAGCUGGgcgaagcccUCGGUGa -3'
miRNA:   3'- -GGUGCaGcAGGUCCUCGGCC---------AGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 49307 0.72 0.26677
Target:  5'- gCCuuGcCGUCCAGGAucgacccgucggcgGCCauGGUCGGCGc -3'
miRNA:   3'- -GGugCaGCAGGUCCU--------------CGG--CCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 65119 0.72 0.268688
Target:  5'- uCCGCGUCGaggUCCAGGGuGuuGGUgGGgGu -3'
miRNA:   3'- -GGUGCAGC---AGGUCCU-CggCCAgCCgC- -5'
19000 5' -60.3 NC_004684.1 + 63900 0.7 0.323964
Target:  5'- gCCAgGUgGUCCAGGuaCCGGguaaCGGCGu -3'
miRNA:   3'- -GGUgCAgCAGGUCCucGGCCa---GCCGC- -5'
19000 5' -60.3 NC_004684.1 + 44914 0.7 0.354625
Target:  5'- -gGCGUCGgugcgcgCCGGGuAGUCGGU-GGCGa -3'
miRNA:   3'- ggUGCAGCa------GGUCC-UCGGCCAgCCGC- -5'
19000 5' -60.3 NC_004684.1 + 47893 0.69 0.387277
Target:  5'- aUCAgGUCGUaggCAGGccaCGGUCGGCGg -3'
miRNA:   3'- -GGUgCAGCAg--GUCCucgGCCAGCCGC- -5'
19000 5' -60.3 NC_004684.1 + 58819 0.69 0.404329
Target:  5'- gCCGCcUCGgaugUCCGGGAuGaugCGGUCGGCGc -3'
miRNA:   3'- -GGUGcAGC----AGGUCCU-Cg--GCCAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.