miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19001 3' -63.1 NC_004684.1 + 25744 0.66 0.374706
Target:  5'- aCGGuguguaCGGCGCgaUCCccggccuGGCGUCCGGCUc -3'
miRNA:   3'- -GCCua----GUCGCGg-AGG-------UCGCGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 54011 0.66 0.370618
Target:  5'- uGGAUCAcguuGUGCCUCCucGGCcuucguggcggguguGCCC-GCCg -3'
miRNA:   3'- gCCUAGU----CGCGGAGG--UCG---------------CGGGcCGG- -5'
19001 3' -63.1 NC_004684.1 + 66804 0.66 0.367369
Target:  5'- gCGGAacuUCGGgGUCUCgaCGGUgGCCuCGGCCu -3'
miRNA:   3'- -GCCU---AGUCgCGGAG--GUCG-CGG-GCCGG- -5'
19001 3' -63.1 NC_004684.1 + 23589 0.66 0.367369
Target:  5'- cCGGA-CAGCGuCUUCCAG-GCCggaaagCGGUCa -3'
miRNA:   3'- -GCCUaGUCGC-GGAGGUCgCGG------GCCGG- -5'
19001 3' -63.1 NC_004684.1 + 10386 0.66 0.367369
Target:  5'- uCGGugcgGGCGaCCUCUGGCGCgacaCCGGCg -3'
miRNA:   3'- -GCCuag-UCGC-GGAGGUCGCG----GGCCGg -5'
19001 3' -63.1 NC_004684.1 + 51931 0.66 0.367369
Target:  5'- aGGAgaUC-GCGCacugggugaugCUCCAGCgcagcgcgcgcgGCCUGGCCg -3'
miRNA:   3'- gCCU--AGuCGCG-----------GAGGUCG------------CGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 51172 0.66 0.367369
Target:  5'- uGGccgauGCGCCgggCCAuggaccgcGCGCCCuGGCCg -3'
miRNA:   3'- gCCuagu-CGCGGa--GGU--------CGCGGG-CCGG- -5'
19001 3' -63.1 NC_004684.1 + 23550 0.66 0.367369
Target:  5'- gCGGcAUCGGUcgcgGCCUggaCAGCcuGCCgGGCCg -3'
miRNA:   3'- -GCC-UAGUCG----CGGAg--GUCG--CGGgCCGG- -5'
19001 3' -63.1 NC_004684.1 + 24199 0.66 0.36656
Target:  5'- ----cCGGUGCCUgCGGUGCCCGacaucgcGCCg -3'
miRNA:   3'- gccuaGUCGCGGAgGUCGCGGGC-------CGG- -5'
19001 3' -63.1 NC_004684.1 + 46278 0.67 0.362533
Target:  5'- aGGAUCacgucgcggcggccgAGCGCgUUgCGGCGCuuGGCg -3'
miRNA:   3'- gCCUAG---------------UCGCGgAG-GUCGCGggCCGg -5'
19001 3' -63.1 NC_004684.1 + 56134 0.67 0.359334
Target:  5'- -uGA-CGGCgGCCUCCAG-GCCCacggugguGGCCa -3'
miRNA:   3'- gcCUaGUCG-CGGAGGUCgCGGG--------CCGG- -5'
19001 3' -63.1 NC_004684.1 + 2616 0.67 0.359334
Target:  5'- aGGugcgCAGCGUC-CgCAGUGCCgGGCg -3'
miRNA:   3'- gCCua--GUCGCGGaG-GUCGCGGgCCGg -5'
19001 3' -63.1 NC_004684.1 + 46393 0.67 0.359334
Target:  5'- uGGcgCacgccaAGCGCCgCaacGCGCUCGGCCg -3'
miRNA:   3'- gCCuaG------UCGCGGaGgu-CGCGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 13863 0.67 0.359334
Target:  5'- aGGcgCAGguugguCGCCUggAGCGCCaGGCCg -3'
miRNA:   3'- gCCuaGUC------GCGGAggUCGCGGgCCGG- -5'
19001 3' -63.1 NC_004684.1 + 56526 0.67 0.359334
Target:  5'- aGGAUCgugguGGCgGCCUCCuugaccccgagAGCaugGCCCGGUa -3'
miRNA:   3'- gCCUAG-----UCG-CGGAGG-----------UCG---CGGGCCGg -5'
19001 3' -63.1 NC_004684.1 + 39317 0.67 0.359334
Target:  5'- -----gAGCGCC-CCAguugccGCGCCCaGGCCg -3'
miRNA:   3'- gccuagUCGCGGaGGU------CGCGGG-CCGG- -5'
19001 3' -63.1 NC_004684.1 + 41913 0.67 0.354572
Target:  5'- uCGGuggcCAGCGCCUCCGGgugguccacgaagaaCGucggcgucggcaCCUGGCCg -3'
miRNA:   3'- -GCCua--GUCGCGGAGGUC---------------GC------------GGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 51577 0.67 0.354572
Target:  5'- cCGGG-CGGUGCCauccgcaggucgccaUCCugGGgGCCuCGGCCa -3'
miRNA:   3'- -GCCUaGUCGCGG---------------AGG--UCgCGG-GCCGG- -5'
19001 3' -63.1 NC_004684.1 + 8714 0.67 0.354572
Target:  5'- aGGAcuccauggCGGCGCUgaucccgauguucgCCGccGCGCCCGGCg -3'
miRNA:   3'- gCCUa-------GUCGCGGa-------------GGU--CGCGGGCCGg -5'
19001 3' -63.1 NC_004684.1 + 11905 0.67 0.351422
Target:  5'- cCGGAcagCGGCGCgCUC--GCGCCCuucuccacgguGGCCu -3'
miRNA:   3'- -GCCUa--GUCGCG-GAGguCGCGGG-----------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.