miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 9378 0.67 0.645711
Target:  5'- cGCCAcCGUCGgcGUCGggaacucgaCAUCGGCCa- -3'
miRNA:   3'- -CGGU-GCGGCauCAGCg--------GUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 10323 0.71 0.386033
Target:  5'- -gCGCGCCGcaacgcaGGcCGCCAUCGACCcCg -3'
miRNA:   3'- cgGUGCGGCa------UCaGCGGUAGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 11919 0.68 0.539848
Target:  5'- aGUCGCGCC--AGUCGCCGgacagCGGCgcgCUCg -3'
miRNA:   3'- -CGGUGCGGcaUCAGCGGUa----GCUG---GAG- -5'
19004 3' -57 NC_004684.1 + 12719 0.72 0.360538
Target:  5'- aGCCACGCC--AGagGCCGUgGACCa- -3'
miRNA:   3'- -CGGUGCGGcaUCagCGGUAgCUGGag -5'
19004 3' -57 NC_004684.1 + 12842 0.75 0.244975
Target:  5'- aGCCGCGCgGgccaAGagGgCGUCGACCUCg -3'
miRNA:   3'- -CGGUGCGgCa---UCagCgGUAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 12890 0.66 0.709186
Target:  5'- gGgCGCGUCGUcggcGGgggUGCCGUUGuCCUCg -3'
miRNA:   3'- -CgGUGCGGCA----UCa--GCGGUAGCuGGAG- -5'
19004 3' -57 NC_004684.1 + 12908 0.72 0.328412
Target:  5'- cGCCAgcggUGCCGgug-CGCCGUCGGCCa- -3'
miRNA:   3'- -CGGU----GCGGCaucaGCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 13548 0.67 0.635034
Target:  5'- aGCUGCGCC-UGG-CgGCCAUCGGCUa- -3'
miRNA:   3'- -CGGUGCGGcAUCaG-CGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 14414 0.66 0.667018
Target:  5'- uGUCA-GCgGUGGUCuuGCCAcCGACCUUc -3'
miRNA:   3'- -CGGUgCGgCAUCAG--CGGUaGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 14497 0.66 0.677631
Target:  5'- aCCACGCCG--GUCGCCggUGGCa-- -3'
miRNA:   3'- cGGUGCGGCauCAGCGGuaGCUGgag -5'
19004 3' -57 NC_004684.1 + 14829 0.67 0.624355
Target:  5'- gGgCGCGCCGUGGUgCGUCGcccccgaugacUUGACCg- -3'
miRNA:   3'- -CgGUGCGGCAUCA-GCGGU-----------AGCUGGag -5'
19004 3' -57 NC_004684.1 + 15164 0.79 0.120433
Target:  5'- aCCGCGCCGauaagGCCGUCGACCUCa -3'
miRNA:   3'- cGGUGCGGCaucagCGGUAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 15453 0.67 0.613683
Target:  5'- uGCC-CGCagGUA-UCGCCGUCGAaCUCg -3'
miRNA:   3'- -CGGuGCGg-CAUcAGCGGUAGCUgGAG- -5'
19004 3' -57 NC_004684.1 + 15737 0.7 0.449942
Target:  5'- gGCCuACcUCGUAGUCGuCCAgcaaccCGGCCUCg -3'
miRNA:   3'- -CGG-UGcGGCAUCAGC-GGUa-----GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 16132 0.66 0.709186
Target:  5'- gGCCACgauGUCGUcGUCGCCGggcacgucaaCGACCa- -3'
miRNA:   3'- -CGGUG---CGGCAuCAGCGGUa---------GCUGGag -5'
19004 3' -57 NC_004684.1 + 17155 0.66 0.688203
Target:  5'- --gGCaCCGUcGUCGCCGUCGAgCUg -3'
miRNA:   3'- cggUGcGGCAuCAGCGGUAGCUgGAg -5'
19004 3' -57 NC_004684.1 + 17526 0.73 0.305003
Target:  5'- uGCCACGCCGgacgacgUGGUCGCCuaccagGACCg- -3'
miRNA:   3'- -CGGUGCGGC-------AUCAGCGGuag---CUGGag -5'
19004 3' -57 NC_004684.1 + 18098 1.12 0.000563
Target:  5'- cGCCACGCCGUAGUCGCCAUCGACCUCa -3'
miRNA:   3'- -CGGUGCGGCAUCAGCGGUAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 18217 0.66 0.703964
Target:  5'- gGCCAUGCCGcacuggggcaagGGUccguacaacguggcCGCCAUCGACg-- -3'
miRNA:   3'- -CGGUGCGGCa-----------UCA--------------GCGGUAGCUGgag -5'
19004 3' -57 NC_004684.1 + 18634 0.7 0.449942
Target:  5'- cGUCGCGUCGUAGUCgauguuGUCggUGACCUUg -3'
miRNA:   3'- -CGGUGCGGCAUCAG------CGGuaGCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.