miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 939 0.67 0.635034
Target:  5'- cGUCGCguaGCUGUAGcaCGCCGUUGAUCUg -3'
miRNA:   3'- -CGGUG---CGGCAUCa-GCGGUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 1069 0.69 0.486982
Target:  5'- uGCUugGCCGagaacgccccggAGUCGCCAaUGACC-Cg -3'
miRNA:   3'- -CGGugCGGCa-----------UCAGCGGUaGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 1220 0.7 0.459542
Target:  5'- cGgCAUGCCGUG---GCCGUCGACCa- -3'
miRNA:   3'- -CgGUGCGGCAUcagCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 2190 0.75 0.227071
Target:  5'- cGCCGCGCCGUAGUgcugCGCCAccaguugCGAgCUg -3'
miRNA:   3'- -CGGUGCGGCAUCA----GCGGUa------GCUgGAg -5'
19004 3' -57 NC_004684.1 + 2285 0.66 0.667018
Target:  5'- uCCuCGgCGUAGUgGCCGUgCGgcACCUCg -3'
miRNA:   3'- cGGuGCgGCAUCAgCGGUA-GC--UGGAG- -5'
19004 3' -57 NC_004684.1 + 2352 0.68 0.592392
Target:  5'- uGCCGCccugaguUCGUGGcCGCCAUCGACa-- -3'
miRNA:   3'- -CGGUGc------GGCAUCaGCGGUAGCUGgag -5'
19004 3' -57 NC_004684.1 + 2547 0.69 0.498977
Target:  5'- cGgCACGCCGagcUGGcCGCCcaggcgggcgauGUCGGCCUUg -3'
miRNA:   3'- -CgGUGCGGC---AUCaGCGG------------UAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 3480 0.69 0.498977
Target:  5'- aGCCACGCCG-GGcCGCaCcgUGGCCg- -3'
miRNA:   3'- -CGGUGCGGCaUCaGCG-GuaGCUGGag -5'
19004 3' -57 NC_004684.1 + 4111 0.68 0.596642
Target:  5'- cGCCAUGCCGgugaacggcagcaggUGGUgggCGCaCAUCGACUg- -3'
miRNA:   3'- -CGGUGCGGC---------------AUCA---GCG-GUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 4745 0.67 0.613683
Target:  5'- gGCCACaGCCGcaAGU-GCCG-CGACCUg -3'
miRNA:   3'- -CGGUG-CGGCa-UCAgCGGUaGCUGGAg -5'
19004 3' -57 NC_004684.1 + 4889 0.73 0.2913
Target:  5'- gGCUcagGCgGCC-UGGUCGCCAcCGGCCUCg -3'
miRNA:   3'- -CGG---UG-CGGcAUCAGCGGUaGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 5082 0.67 0.635034
Target:  5'- aCCuuCGCCcgGUAcGUCGCggaGUCGGCCUCc -3'
miRNA:   3'- cGGu-GCGG--CAU-CAGCGg--UAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 5693 0.68 0.58179
Target:  5'- uUCACGUaCGUGGUCGCgGUggcgaaGGCCUCc -3'
miRNA:   3'- cGGUGCG-GCAUCAGCGgUAg-----CUGGAG- -5'
19004 3' -57 NC_004684.1 + 6070 0.75 0.244975
Target:  5'- cGCCGCGCUgGUAGccgaUGCCGggggCGGCCUCg -3'
miRNA:   3'- -CGGUGCGG-CAUCa---GCGGUa---GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 6248 0.66 0.667018
Target:  5'- cGCCgcACGCUGgccGcCGCCGUCGAacugCUCa -3'
miRNA:   3'- -CGG--UGCGGCau-CaGCGGUAGCUg---GAG- -5'
19004 3' -57 NC_004684.1 + 6789 0.74 0.257552
Target:  5'- uGCuCGCGCCGacGGUgGCCAggUCGACCUg -3'
miRNA:   3'- -CG-GUGCGGCa-UCAgCGGU--AGCUGGAg -5'
19004 3' -57 NC_004684.1 + 6807 0.69 0.529514
Target:  5'- gGCCACuaCGa---CGCCGUCGGCCUg -3'
miRNA:   3'- -CGGUGcgGCaucaGCGGUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 6894 0.75 0.232913
Target:  5'- gGCCgacgGCGUCGUAGUgGCCGUCGuCCa- -3'
miRNA:   3'- -CGG----UGCGGCAUCAgCGGUAGCuGGag -5'
19004 3' -57 NC_004684.1 + 7748 0.7 0.469249
Target:  5'- cGCCGCGCCGcuGUCGuCCGaCGACgaCa -3'
miRNA:   3'- -CGGUGCGGCauCAGC-GGUaGCUGgaG- -5'
19004 3' -57 NC_004684.1 + 8627 0.68 0.558614
Target:  5'- aCCACGCCGUugccgaucaGCCG-CGACUUCu -3'
miRNA:   3'- cGGUGCGGCAucag-----CGGUaGCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.