miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 18098 1.12 0.000563
Target:  5'- cGCCACGCCGUAGUCGCCAUCGACCUCa -3'
miRNA:   3'- -CGGUGCGGCAUCAGCGGUAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 39006 0.81 0.094095
Target:  5'- cGUCACGCaCGgcGUCGgUAUCGACCUCu -3'
miRNA:   3'- -CGGUGCG-GCauCAGCgGUAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 15164 0.79 0.120433
Target:  5'- aCCGCGCCGauaagGCCGUCGACCUCa -3'
miRNA:   3'- cGGUGCGGCaucagCGGUAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 66975 0.78 0.145502
Target:  5'- gGCCGCGCCGaaGGUCGCCAcCGGCgCUg -3'
miRNA:   3'- -CGGUGCGGCa-UCAGCGGUaGCUG-GAg -5'
19004 3' -57 NC_004684.1 + 66850 0.75 0.21576
Target:  5'- aCCGCGCCGaGGUCGCCGggGugCUg -3'
miRNA:   3'- cGGUGCGGCaUCAGCGGUagCugGAg -5'
19004 3' -57 NC_004684.1 + 2190 0.75 0.227071
Target:  5'- cGCCGCGCCGUAGUgcugCGCCAccaguugCGAgCUg -3'
miRNA:   3'- -CGGUGCGGCAUCA----GCGGUa------GCUgGAg -5'
19004 3' -57 NC_004684.1 + 41771 0.75 0.232913
Target:  5'- cGCCGCGCUGgguGUUGCCGaggUCGGCC-Cg -3'
miRNA:   3'- -CGGUGCGGCau-CAGCGGU---AGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 6894 0.75 0.232913
Target:  5'- gGCCgacgGCGUCGUAGUgGCCGUCGuCCa- -3'
miRNA:   3'- -CGG----UGCGGCAUCAgCGGUAGCuGGag -5'
19004 3' -57 NC_004684.1 + 12842 0.75 0.244975
Target:  5'- aGCCGCGCgGgccaAGagGgCGUCGACCUCg -3'
miRNA:   3'- -CGGUGCGgCa---UCagCgGUAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 6070 0.75 0.244975
Target:  5'- cGCCGCGCUgGUAGccgaUGCCGggggCGGCCUCg -3'
miRNA:   3'- -CGGUGCGG-CAUCa---GCGGUa---GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 60540 0.74 0.257552
Target:  5'- cGCCGCGCCc-GGU-GCCGUCGAcacCCUCg -3'
miRNA:   3'- -CGGUGCGGcaUCAgCGGUAGCU---GGAG- -5'
19004 3' -57 NC_004684.1 + 6789 0.74 0.257552
Target:  5'- uGCuCGCGCCGacGGUgGCCAggUCGACCUg -3'
miRNA:   3'- -CG-GUGCGGCa-UCAgCGGU--AGCUGGAg -5'
19004 3' -57 NC_004684.1 + 41998 0.74 0.284283
Target:  5'- gGCCACGauGUcGUCGCgGUCGGCCa- -3'
miRNA:   3'- -CGGUGCggCAuCAGCGgUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 49089 0.74 0.284283
Target:  5'- cGCCGCcaaccggcagguGCCacaGGUCGCCGUCGGCgUCg -3'
miRNA:   3'- -CGGUG------------CGGca-UCAGCGGUAGCUGgAG- -5'
19004 3' -57 NC_004684.1 + 4889 0.73 0.2913
Target:  5'- gGCUcagGCgGCC-UGGUCGCCAcCGGCCUCg -3'
miRNA:   3'- -CGG---UG-CGGcAUCAGCGGUaGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 17526 0.73 0.305003
Target:  5'- uGCCACGCCGgacgacgUGGUCGCCuaccagGACCg- -3'
miRNA:   3'- -CGGUGCGGC-------AUCAGCGGuag---CUGGag -5'
19004 3' -57 NC_004684.1 + 33294 0.73 0.31316
Target:  5'- cGCCGgGCUGUccGUCGCCAUggccacggugaCGACCUUg -3'
miRNA:   3'- -CGGUgCGGCAu-CAGCGGUA-----------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 27584 0.73 0.31316
Target:  5'- gGCC-CGCCGUucacuGUaaucgGCCAUgGACCUCa -3'
miRNA:   3'- -CGGuGCGGCAu----CAg----CGGUAgCUGGAG- -5'
19004 3' -57 NC_004684.1 + 12908 0.72 0.328412
Target:  5'- cGCCAgcggUGCCGgug-CGCCGUCGGCCa- -3'
miRNA:   3'- -CGGU----GCGGCaucaGCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 28894 0.72 0.336241
Target:  5'- cGgCGCGCCGUGGcgacCGCCGcugaUCGACCg- -3'
miRNA:   3'- -CgGUGCGGCAUCa---GCGGU----AGCUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.