miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 24422 0.69 0.509073
Target:  5'- cCCAgGCCGaAGUcgaCGCCuUCGugCUCa -3'
miRNA:   3'- cGGUgCGGCaUCA---GCGGuAGCugGAG- -5'
19004 3' -57 NC_004684.1 + 10323 0.71 0.386033
Target:  5'- -gCGCGCCGcaacgcaGGcCGCCAUCGACCcCg -3'
miRNA:   3'- cgGUGCGGCa------UCaGCGGUAGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 40101 0.71 0.394792
Target:  5'- gGCCGaucucgugGCCGUAGcgggCGCUggCGGCCUCg -3'
miRNA:   3'- -CGGUg-------CGGCAUCa---GCGGuaGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 37946 0.71 0.421825
Target:  5'- uGCUcgACGCgGUGGagGCCAUCGuCCUg -3'
miRNA:   3'- -CGG--UGCGgCAUCagCGGUAGCuGGAg -5'
19004 3' -57 NC_004684.1 + 54282 0.71 0.421825
Target:  5'- cGCCACccgGCCGggGGUgCGCgCAUCGGCCc- -3'
miRNA:   3'- -CGGUG---CGGCa-UCA-GCG-GUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 31751 0.7 0.431081
Target:  5'- gGCCcuguACGUCGgccuGUaCGCCAUCGACCcCg -3'
miRNA:   3'- -CGG----UGCGGCau--CA-GCGGUAGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 40518 0.7 0.440454
Target:  5'- cGCgCACGCCcaGGUUGUCGgcgguggCGACCUCc -3'
miRNA:   3'- -CG-GUGCGGcaUCAGCGGUa------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 7748 0.7 0.469249
Target:  5'- cGCCGCGCCGcuGUCGuCCGaCGACgaCa -3'
miRNA:   3'- -CGGUGCGGCauCAGC-GGUaGCUGgaG- -5'
19004 3' -57 NC_004684.1 + 3480 0.69 0.498977
Target:  5'- aGCCACGCCG-GGcCGCaCcgUGGCCg- -3'
miRNA:   3'- -CGGUGCGGCaUCaGCG-GuaGCUGGag -5'
19004 3' -57 NC_004684.1 + 64800 0.71 0.386033
Target:  5'- aCCACGCCGuUGGU-GCUGUCGAgUUCg -3'
miRNA:   3'- cGGUGCGGC-AUCAgCGGUAGCUgGAG- -5'
19004 3' -57 NC_004684.1 + 42526 0.72 0.368905
Target:  5'- cGCuCAcCGCCGUGGUCGgCGugcugacggcguUCGGCUUCg -3'
miRNA:   3'- -CG-GU-GCGGCAUCAGCgGU------------AGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 12719 0.72 0.360538
Target:  5'- aGCCACGCC--AGagGCCGUgGACCa- -3'
miRNA:   3'- -CGGUGCGGcaUCagCGGUAgCUGGag -5'
19004 3' -57 NC_004684.1 + 6070 0.75 0.244975
Target:  5'- cGCCGCGCUgGUAGccgaUGCCGggggCGGCCUCg -3'
miRNA:   3'- -CGGUGCGG-CAUCa---GCGGUa---GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 60540 0.74 0.257552
Target:  5'- cGCCGCGCCc-GGU-GCCGUCGAcacCCUCg -3'
miRNA:   3'- -CGGUGCGGcaUCAgCGGUAGCU---GGAG- -5'
19004 3' -57 NC_004684.1 + 49089 0.74 0.284283
Target:  5'- cGCCGCcaaccggcagguGCCacaGGUCGCCGUCGGCgUCg -3'
miRNA:   3'- -CGGUG------------CGGca-UCAGCGGUAGCUGgAG- -5'
19004 3' -57 NC_004684.1 + 4889 0.73 0.2913
Target:  5'- gGCUcagGCgGCC-UGGUCGCCAcCGGCCUCg -3'
miRNA:   3'- -CGG---UG-CGGcAUCAGCGGUaGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 17526 0.73 0.305003
Target:  5'- uGCCACGCCGgacgacgUGGUCGCCuaccagGACCg- -3'
miRNA:   3'- -CGGUGCGGC-------AUCAGCGGuag---CUGGag -5'
19004 3' -57 NC_004684.1 + 12908 0.72 0.328412
Target:  5'- cGCCAgcggUGCCGgug-CGCCGUCGGCCa- -3'
miRNA:   3'- -CGGU----GCGGCaucaGCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 28894 0.72 0.336241
Target:  5'- cGgCGCGCCGUGGcgacCGCCGcugaUCGACCg- -3'
miRNA:   3'- -CgGUGCGGCAUCa---GCGGU----AGCUGGag -5'
19004 3' -57 NC_004684.1 + 19392 0.72 0.352305
Target:  5'- uGUCAuggUGCUGUgggcguucaccGGUCGCCAguUCGGCCUCu -3'
miRNA:   3'- -CGGU---GCGGCA-----------UCAGCGGU--AGCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.