Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19005 | 5' | -53.7 | NC_004684.1 | + | 29135 | 0.67 | 0.752107 |
Target: 5'- gUGCGAGCUGGugguGCC-GACGcAGUucGCCg -3' miRNA: 3'- -AUGCUCGGUCu---CGGaCUGC-UCAu-UGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 4253 | 0.67 | 0.752107 |
Target: 5'- -cUGAGCCGGuGCCcGGCGGaaUGGCCu -3' miRNA: 3'- auGCUCGGUCuCGGaCUGCUc-AUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 27209 | 0.68 | 0.741676 |
Target: 5'- gUGCGAuCCAGAGCCUucucauCGGGccgcUGACCg -3' miRNA: 3'- -AUGCUcGGUCUCGGAcu----GCUC----AUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 4777 | 0.68 | 0.720493 |
Target: 5'- cGCGucGCCAGcaagcGCCUcGGCGcGGUGGCCg -3' miRNA: 3'- aUGCu-CGGUCu----CGGA-CUGC-UCAUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 64709 | 0.68 | 0.720493 |
Target: 5'- gGCGGccGCCAGGGCCUccauCGGGUccaucuuguGGCCg -3' miRNA: 3'- aUGCU--CGGUCUCGGAcu--GCUCA---------UUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 54353 | 0.68 | 0.720493 |
Target: 5'- cGCGgaAGCCGaccGGCCcGGCGAcGUAACCg -3' miRNA: 3'- aUGC--UCGGUc--UCGGaCUGCU-CAUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 48569 | 0.68 | 0.709763 |
Target: 5'- cUGCGcGCC-GAGCUUGACGAuggaguUGGCCa -3' miRNA: 3'- -AUGCuCGGuCUCGGACUGCUc-----AUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 19385 | 0.68 | 0.698957 |
Target: 5'- --gGAG-CAGGGCCUGACGcgcacugaguuGGUGACg -3' miRNA: 3'- augCUCgGUCUCGGACUGC-----------UCAUUGg -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 7327 | 0.68 | 0.698957 |
Target: 5'- cACGGGCCGccGGGCCgcgcgccACGAGUGcgagGCCu -3' miRNA: 3'- aUGCUCGGU--CUCGGac-----UGCUCAU----UGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 31004 | 0.69 | 0.688086 |
Target: 5'- gGCGcAGCUGG-GCCUGACGcc-GACCg -3' miRNA: 3'- aUGC-UCGGUCuCGGACUGCucaUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 33736 | 0.69 | 0.67716 |
Target: 5'- aGCGAcGCCaugcccggcgaGGGGUcgCUGACGAgGUAGCCg -3' miRNA: 3'- aUGCU-CGG-----------UCUCG--GACUGCU-CAUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 22261 | 0.69 | 0.666193 |
Target: 5'- cGCGAGCaugGGAccGCCUGGCG-GcGGCCa -3' miRNA: 3'- aUGCUCGg--UCU--CGGACUGCuCaUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 8846 | 0.69 | 0.666193 |
Target: 5'- gACuGGCCAuGGGCCUGgACGuGUcGCCu -3' miRNA: 3'- aUGcUCGGU-CUCGGAC-UGCuCAuUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 61854 | 0.69 | 0.666192 |
Target: 5'- --aGGGUCAcAGCCUGGCGGG--ACCa -3' miRNA: 3'- augCUCGGUcUCGGACUGCUCauUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 42077 | 0.69 | 0.666192 |
Target: 5'- aUACGccGCCAGGGCC-GACGAaccGCCg -3' miRNA: 3'- -AUGCu-CGGUCUCGGaCUGCUcauUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 8058 | 0.69 | 0.64417 |
Target: 5'- aACG-GCCGG-GUCgUGGcCGAGUGGCCa -3' miRNA: 3'- aUGCuCGGUCuCGG-ACU-GCUCAUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 64923 | 0.69 | 0.640862 |
Target: 5'- gGCGAcCCAGGuggcggcggugagcGCCUGGCGggcGGUGGCCc -3' miRNA: 3'- aUGCUcGGUCU--------------CGGACUGC---UCAUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 19556 | 0.7 | 0.632035 |
Target: 5'- gGCGGuGCCAGgucuccgGGCCUGGCGucGUGcACCu -3' miRNA: 3'- aUGCU-CGGUC-------UCGGACUGCu-CAU-UGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 19278 | 0.7 | 0.622105 |
Target: 5'- --gGAGCCGGAGCCaccUGGCGAcggAGCg -3' miRNA: 3'- augCUCGGUCUCGG---ACUGCUca-UUGg -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 5870 | 0.7 | 0.611079 |
Target: 5'- gGCaGGCCGGgcagcaccAGCCUGAcCGGGUGGCg -3' miRNA: 3'- aUGcUCGGUC--------UCGGACU-GCUCAUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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