Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19005 | 5' | -53.7 | NC_004684.1 | + | 17515 | 0.67 | 0.772588 |
Target: 5'- cGCGAGCgCGGuGCCacgccgGACGAcGUggUCg -3' miRNA: 3'- aUGCUCG-GUCuCGGa-----CUGCU-CAuuGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 18347 | 0.73 | 0.442562 |
Target: 5'- -cCGAGCCugccgaggaggaGGAGCCUG-CGccGGUGGCCg -3' miRNA: 3'- auGCUCGG------------UCUCGGACuGC--UCAUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 19278 | 0.7 | 0.622105 |
Target: 5'- --gGAGCCGGAGCCaccUGGCGAcggAGCg -3' miRNA: 3'- augCUCGGUCUCGG---ACUGCUca-UUGg -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 19385 | 0.68 | 0.698957 |
Target: 5'- --gGAG-CAGGGCCUGACGcgcacugaguuGGUGACg -3' miRNA: 3'- augCUCgGUCUCGGACUGC-----------UCAUUGg -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 19556 | 0.7 | 0.632035 |
Target: 5'- gGCGGuGCCAGgucuccgGGCCUGGCGucGUGcACCu -3' miRNA: 3'- aUGCU-CGGUC-------UCGGACUGCu-CAU-UGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 22261 | 0.69 | 0.666193 |
Target: 5'- cGCGAGCaugGGAccGCCUGGCG-GcGGCCa -3' miRNA: 3'- aUGCUCGg--UCU--CGGACUGCuCaUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 22972 | 0.7 | 0.589094 |
Target: 5'- -cCGGGCCGGAcGCCa-ACGAgGUGGCCg -3' miRNA: 3'- auGCUCGGUCU-CGGacUGCU-CAUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 25873 | 0.67 | 0.802189 |
Target: 5'- cUGCGGuGCCAGGGCCU--CGuAGcgGGCCa -3' miRNA: 3'- -AUGCU-CGGUCUCGGAcuGC-UCa-UUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 26048 | 0.7 | 0.578152 |
Target: 5'- gGCG-GCCAGGGC--GGCGAGUucgaGGCCa -3' miRNA: 3'- aUGCuCGGUCUCGgaCUGCUCA----UUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 27209 | 0.68 | 0.741676 |
Target: 5'- gUGCGAuCCAGAGCCUucucauCGGGccgcUGACCg -3' miRNA: 3'- -AUGCUcGGUCUCGGAcu----GCUC----AUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 27511 | 0.73 | 0.432853 |
Target: 5'- gGCGGGCCAGAGgCUGGCaagGAcGUGcgcaGCCg -3' miRNA: 3'- aUGCUCGGUCUCgGACUG---CU-CAU----UGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 28803 | 0.72 | 0.513709 |
Target: 5'- -cCGAGCUGGuGCUcGACGGuGUGACCg -3' miRNA: 3'- auGCUCGGUCuCGGaCUGCU-CAUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 29086 | 0.67 | 0.802189 |
Target: 5'- -cCGAGCagauGAGCCUGGCcuggAGCCg -3' miRNA: 3'- auGCUCGgu--CUCGGACUGcucaUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 29135 | 0.67 | 0.752107 |
Target: 5'- gUGCGAGCUGGugguGCC-GACGcAGUucGCCg -3' miRNA: 3'- -AUGCUCGGUCu---CGGaCUGC-UCAu-UGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 31004 | 0.69 | 0.688086 |
Target: 5'- gGCGcAGCUGG-GCCUGACGcc-GACCg -3' miRNA: 3'- aUGC-UCGGUCuCGGACUGCucaUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 33736 | 0.69 | 0.67716 |
Target: 5'- aGCGAcGCCaugcccggcgaGGGGUcgCUGACGAgGUAGCCg -3' miRNA: 3'- aUGCU-CGG-----------UCUCG--GACUGCU-CAUUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 38115 | 0.71 | 0.567254 |
Target: 5'- cGCGGuGCCGGAGCaaGugGAG--GCCg -3' miRNA: 3'- aUGCU-CGGUCUCGgaCugCUCauUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 38680 | 0.66 | 0.830181 |
Target: 5'- gACGcGCCAGAaaGCCUGGagcgacaggGAGUGuucGCCg -3' miRNA: 3'- aUGCuCGGUCU--CGGACUg--------CUCAU---UGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 42077 | 0.69 | 0.666192 |
Target: 5'- aUACGccGCCAGGGCC-GACGAaccGCCg -3' miRNA: 3'- -AUGCu-CGGUCUCGGaCUGCUcauUGG- -5' |
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19005 | 5' | -53.7 | NC_004684.1 | + | 42198 | 0.66 | 0.839107 |
Target: 5'- -gUGGGCCguGGAGCUggUGGcCGAcGUGGCCg -3' miRNA: 3'- auGCUCGG--UCUCGG--ACU-GCU-CAUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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