miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19005 5' -53.7 NC_004684.1 + 4253 0.67 0.752107
Target:  5'- -cUGAGCCGGuGCCcGGCGGaaUGGCCu -3'
miRNA:   3'- auGCUCGGUCuCGGaCUGCUc-AUUGG- -5'
19005 5' -53.7 NC_004684.1 + 4482 0.71 0.545624
Target:  5'- cACcGGCCAGGGCCUGGCccgccGUGGCa -3'
miRNA:   3'- aUGcUCGGUCUCGGACUGcu---CAUUGg -5'
19005 5' -53.7 NC_004684.1 + 4777 0.68 0.720493
Target:  5'- cGCGucGCCAGcaagcGCCUcGGCGcGGUGGCCg -3'
miRNA:   3'- aUGCu-CGGUCu----CGGA-CUGC-UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 5870 0.7 0.611079
Target:  5'- gGCaGGCCGGgcagcaccAGCCUGAcCGGGUGGCg -3'
miRNA:   3'- aUGcUCGGUC--------UCGGACU-GCUCAUUGg -5'
19005 5' -53.7 NC_004684.1 + 7327 0.68 0.698957
Target:  5'- cACGGGCCGccGGGCCgcgcgccACGAGUGcgagGCCu -3'
miRNA:   3'- aUGCUCGGU--CUCGGac-----UGCUCAU----UGG- -5'
19005 5' -53.7 NC_004684.1 + 7631 0.71 0.556409
Target:  5'- --aGAGCCAGcucGCCgUGGCGggcguGGUGACCg -3'
miRNA:   3'- augCUCGGUCu--CGG-ACUGC-----UCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 8058 0.69 0.64417
Target:  5'- aACG-GCCGG-GUCgUGGcCGAGUGGCCa -3'
miRNA:   3'- aUGCuCGGUCuCGG-ACU-GCUCAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 8442 0.67 0.762415
Target:  5'- -cCGGGCCAGGGaaCCUGACuccccGGUGcgcGCCa -3'
miRNA:   3'- auGCUCGGUCUC--GGACUGc----UCAU---UGG- -5'
19005 5' -53.7 NC_004684.1 + 8528 0.7 0.600073
Target:  5'- gGCGuGCUgugcGGGCCgGACGAGgugGACCu -3'
miRNA:   3'- aUGCuCGGu---CUCGGaCUGCUCa--UUGG- -5'
19005 5' -53.7 NC_004684.1 + 8674 0.66 0.839107
Target:  5'- gUGCG-GCCAGGuGCCUGugGccgugcgugaGGUcuguuAGCCg -3'
miRNA:   3'- -AUGCuCGGUCU-CGGACugC----------UCA-----UUGG- -5'
19005 5' -53.7 NC_004684.1 + 8846 0.69 0.666193
Target:  5'- gACuGGCCAuGGGCCUGgACGuGUcGCCu -3'
miRNA:   3'- aUGcUCGGU-CUCGGAC-UGCuCAuUGG- -5'
19005 5' -53.7 NC_004684.1 + 9554 0.67 0.802189
Target:  5'- gUugGAGCCGGugcGCC--GCGAacacGUGGCCg -3'
miRNA:   3'- -AugCUCGGUCu--CGGacUGCU----CAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 9702 0.66 0.830181
Target:  5'- uUGCGcAGCCAu-GCCUGGcCGA-UGGCCa -3'
miRNA:   3'- -AUGC-UCGGUcuCGGACU-GCUcAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 9871 0.66 0.847813
Target:  5'- gGCGGGCCAccGCCUcgggauccGGCGcAGgcACCu -3'
miRNA:   3'- aUGCUCGGUcuCGGA--------CUGC-UCauUGG- -5'
19005 5' -53.7 NC_004684.1 + 10628 0.67 0.802189
Target:  5'- gUAUGGGCguGcuGGCCgagGACGAGgaGCUg -3'
miRNA:   3'- -AUGCUCGguC--UCGGa--CUGCUCauUGG- -5'
19005 5' -53.7 NC_004684.1 + 11099 0.66 0.811713
Target:  5'- gGCGcGCCAGGGCCgGGCuGAu--GCCu -3'
miRNA:   3'- aUGCuCGGUCUCGGaCUG-CUcauUGG- -5'
19005 5' -53.7 NC_004684.1 + 14912 0.66 0.847814
Target:  5'- -uCGuGGCCauggucccgugGGGGUUUGACGAGUGugCg -3'
miRNA:   3'- auGC-UCGG-----------UCUCGGACUGCUCAUugG- -5'
19005 5' -53.7 NC_004684.1 + 15284 0.67 0.802189
Target:  5'- cGCGGuGCaccugcuGGGCCUGGuCGAcGUGGCCg -3'
miRNA:   3'- aUGCU-CGgu-----CUCGGACU-GCU-CAUUGG- -5'
19005 5' -53.7 NC_004684.1 + 15929 0.71 0.567254
Target:  5'- -cCGGcaCCGGAGCCUGGCGGG--GCCu -3'
miRNA:   3'- auGCUc-GGUCUCGGACUGCUCauUGG- -5'
19005 5' -53.7 NC_004684.1 + 16056 0.71 0.566167
Target:  5'- -uCGAGCCGGucacgauGGCgCUGAUGgccGGUGACCg -3'
miRNA:   3'- auGCUCGGUC-------UCG-GACUGC---UCAUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.